BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951553
Length=349
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66816.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 477 3e-134
> AT5G66816.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G50610.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26681495-26681800 FORWARD LENGTH=306
Length=306
Score = 477 bits (258), Expect = 3e-134
Identities = 286/300 (95%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 23 ATGAAACTCTCAGTTTATATCATTCTTAGTATTCTCTTCATTTCGACGGTATTTTACAAA 82
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAAACTCTCAGTTTATATCATTCTTAGTATTCTCTTCATTTCGACGGTATTTTATGAA 60
Query 83 ATACAGTTTACCGAGGCGAGACAGTTGCGGAAAACCAACGATCAAGATCATGATGATCGT 142
|| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct 61 ATTCAGTTTACGGAGGCGAGACAGTTGCGAAAAACCGACGATCAAGATCATGATGATCAT 120
Query 143 CATTTCACAGTCGGGTACACTGATGATTTTGGGCCTACTTCTCCTGGTAACAGTCCAGGC 202
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 121 CATTTCACAGTCGGGTACACTGATGATTTTGGGCCTACTTCTCCTGGTAACAGCCCGGGC 180
Query 203 ATTGGTCATAAGGTGAAGGAGGATGAAGAAAATGTTGAAGGGTATAAAGATGACTTCGAA 262
|||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 181 ATTGGTCATAAGATGAAGGAGAATGAAGAAAATGCTGGAGGGTATAAAGATGACTTCGAA 240
Query 263 CCTACGACGCCAGGACATAGTCCCGGCGTTGGACATACTGTCAAGAACAATGAGCCTAAT 322
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CCTACGACGCCAGGACATAGTCCCGGCGTTGGACATGCTGTCAAGAACAATGAGCCTAAT 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16337018425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5