BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951554
Length=358
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66815.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 529 8e-150
> AT5G66815.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: root; Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26677365-26677865 FORWARD LENGTH=501
Length=501
Score = 529 bits (286), Expect = 8e-150
Identities = 338/362 (93%), Gaps = 7/362 (2%)
Strand=Plus/Plus
Query 3 TCTCCCATTTTTCTTCC-----AATGGAATCGTCTATGGGTCAAAAGAAAACATTGTACG 57
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 84 TCTCCCATTTTTCTTCCAATATAATGGAATCGTTTATGGGTCAAAAGAAAACATTGTACG 143
Query 58 CTTG-TATTTTCTTAATGATGGTGTTTTTTCTAGGGTTCAATTGCGGCCATGGACGAACC 116
| || |||||| |||||| ||||||||||| ||||||||||||| | |||||||||||||
Sbjct 144 CGTGTTATTTT-TTAATGTTGGTGTTTTTTTTAGGGTTCAATTGTGTCCATGGACGAACC 202
Query 117 CTAAAAGTTGATGATAAGATTGATGGTGGTCACGATGATAGCAAGACGATGATGGCATTG 176
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 203 CTAAAAGTTGATGATAAGATTAATGGTGGTCATTATGATAGCAAGACGATGATGGCATTG 262
Query 177 GCAAAGCACAATGTTATGATGGTTGATGACAAGACAGTGCAGTTCTCGCCGCCACCACCA 236
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 263 GCAAAGCACAATGATATGATGGTTGATGACAAGGCAATGCAGTTCTCGCCGCCACCACCA 322
Query 237 CCACCATCGCCGTCACAATCGGGAGGTAAAGAGGCTGAAGATTTCAGGCCTACAACCCCG 296
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 323 CCACCACCGCCGTCACAATCGGGAGGTAAAGATGCTGAAGATTTCAGGCCTACAACGCCT 382
Query 297 GGCCACAGCCCTGGCATTGGCCATAGTTTATCCCATAATTAATCATTTTCATGCAATTTC 356
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 383 GGCCACAGCCCTGGCATTGGCCATAGTTTATCCCATAATTGATCATTTTCATGCAATTTC 442
Query 357 AC 358
||
Sbjct 443 AC 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16789428166
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5