BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951560

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:117873...   558    2e-158
  AT1G18773.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   156    2e-37 
  AT2G48060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   139    2e-32 


> AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:11787313-11789280 
REVERSE LENGTH=1064
Length=1064

 Score =  558 bits (302),  Expect = 2e-158
 Identities = 339/357 (95%), Gaps = 2/357 (1%)
 Strand=Plus/Plus

Query  102  GGGATCTTCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTACA-AACGTTCATGCCATTA  160
            ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  364  GGGATCTCCGAAAGATGAAAGCAGTTTGCTTAAAGCAGTTA-AGAACGTTCATGCCATTA  422

Query  161  TAGATAAGGAAATTGCAGGAGAAATAAATCCAGAAAATGTGTATATCTGTGGATTTAGCC  220
            |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  423  TAGATAAGGAGATTGCAGGAGGAATCAATCCAGAAAATGTGTATATCTGTGGATTTAGCC  482

Query  221  AAGGAGGTGCATTAACCCTGGCTAGTGTTCTTCTTTACCCTAAAGCTCTTGGAGGAGGTT  280
            ||||||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| 
Sbjct  483  AAGGAGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTG  542

Query  281  CAGTCTTTAGCGGATGGATTCCATTCAATTCTTCAATCATCAATCAGTTTACCGAAGATG  340
            |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct  543  CAGTCTTTAGCGGATGGATTCCATTCAATTCTTCGATCACCAATCAGTTTACCGAAGATG  602

Query  341  CTAAAAAGACACCAATCGTGTGGTCTCATGGCATTGATGACAAGACTGTACTATTTGAAG  400
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct  603  CTAAAAAGACACCAATCTTGTGGTCTCATGGCATTGATGACAAGACTGTACTATTCGAAG  662

Query  401  CTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCTGGTATGACTTGTGAATTAAAGG  457
            |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct  663  CTGGTCAAGCAGCTCTTCCTTTTCTTCAACAAGCGGGTGTGACTTGTGAATTCAAGG  719


> AT1G18773.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; BEST Arabidopsis thaliana protein match 
is: carboxylesterases (TAIR:AT4G22300.1); Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:6474802-6475904 
FORWARD LENGTH=850
Length=850

 Score =  156 bits (84),  Expect = 2e-37
 Identities = 100/108 (93%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  349  ACACCAATCGTGTGGTCTCATGGCATTGATGACAAGACTGTACTATTTGAAGCTGGTCAA  408
            |||||| || |||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct  219  ACACCAGTCTTGTGGTCTCATGGCATTGATGAAAAGGCTGTACTATTCGAAGCTGGTCAA  278

Query  409  GCAGCTCTTCCTTTTCTTCAACAAGCTGGTATGACTTGTGAATTAAAG  456
            |||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct  279  GCAGCTCTTCCTTTTCTTCAACAAGCTGGTTTGACTTATGAATTCAAG  326


> AT2G48060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm 
cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function 
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa 
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes 
- 105 (source: NCBI BLink). | chr2:19651196-19662617 REVERSE 
LENGTH=7984
Length=7984

 Score =  139 bits (75),  Expect = 2e-32
 Identities = 91/98 (93%), Gaps = 3/98 (3%)
 Strand=Plus/Plus

Query  1    TTCGATGAGAATTGGTGGGATATGGTGATCGTTAAGACAAAAGGTTCCCATGGCGAGTTT  60
            ||||||||||| |  |||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  186  TTCGATGAGAA-T--TGGGATATGGTGATCGTTAAGACAAAAGTTTCCAATGGCGAGTTT  242

Query  61   TCTGGTGGGCTTCTTGTTGCCTTCGCTACTTCTGGCAG  98
            | ||||||||||||||||||||||||| ||||||||||
Sbjct  243  TTTGGTGGGCTTCTTGTTGCCTTCGCTTCTTCTGGCAG  280



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5