BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951569
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66680.1 | Symbols: DGL1 | dolichyl-diphosphooligosaccharide... 2285 0.0
> AT5G66680.1 | Symbols: DGL1 | dolichyl-diphosphooligosaccharide-protein
glycosyltransferase 48kDa subunit family protein
| chr5:26617544-26620667 REVERSE LENGTH=1696
Length=1696
Score = 2285 bits (1237), Expect = 0.0
Identities = 1311/1348 (97%), Gaps = 0/1348 (0%)
Strand=Plus/Plus
Query 2 AAAACCCTAGGAACCAAATATGATGAACCTCTCGAGATCCGTCGCGTTGATCTCTCTATT 61
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 68 AAAACCCTAGGAACCAAATATGGTGAACCTCTCGAGATCCGTCGCGTTGATCTCTGTATT 127
Query 62 CCTTCTTCCTTTGCTTAGTTTCTCTTTCTCCGTCGATAATCCGACGGATCGGCGAGTTCT 121
||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 128 CCTCCTTCCTTTACTTAGCTTCTCTTTCTCCGTCGATAATCCGACGGATCGGCGTGTTCT 187
Query 122 TGTTCTTCTCGATGATTTATCACTCAAATCCTCTCATTCTATCTTCTTCAACACTCTCAA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TGTTCTTCTCGATGATTTATCACTCAAATCCTCTCATTCTATCTTCTTCAACACTCTCAA 247
Query 182 GTCTCGTGGATTTGATCTCGATTTCAAGTTAGCTGAAGATTCGAAGCTTGCGCTTCAACG 241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GTCTCGTGGATTCGATCTCGATTTCAAGTTAGCTGAAGATTCGAAGCTTGCGCTTCAACG 307
Query 242 ATATGGCCAGTACTTGTACGATGGGTTGATCATCTTCGCCCCATCCACAGAACGGCTTGG 301
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 308 ATACGGCCAGTACTTGTACGATGGGTTGATCATCTTCGCCCCATCAACAGAACGGTTTGG 367
Query 302 AGGATCCTTGGATTCGAAATCCATTGCTGATTTCGTTGATTCCGGTCGTGACCTGATCTT 361
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 368 AGGATCCTTGGATTCGAAATCCATTGCTGATTTTGTTGATTCCGGTCGTGACTTGATCTT 427
Query 362 GTCGGCGGATACTTCTGCATCTGATTTGATTAGGGGTATTGCCACAGAGTGTGGGGTTGA 421
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ATCGGCGGATACTGCTGCATCTGATTTGATTAGGGGTATTGCCACAGAGTGTGGGGTTGA 487
Query 422 TTTTGATGAGGATTCTTCAGCTATGGTTATTGATCATACTAGCTTCTCCGTCTCTGATGT 481
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTTCGATGAGGATTCTTCAGCTATGGTTATTGATCATACTAGCTTCTCCGTCTCTGATGT 547
Query 482 TGACGGCGACCACACCTTGATTGCTGCCGACGATTTTGTTAAATCCGATGTCATTTTAGG 541
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 548 TGACGGCGACCACACCTTGATTGCTGCCGACGATTTAGTGAAATCCGATGTCATTTTGGG 607
Query 542 AAAAACCAAGATTGAGGCCCCCGTCCTCTTCAGAGGAGTTGCACATTCGTTGAACCCTAC 601
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 608 AAAAACCAAGATTGAGGCTCCCGTGCTCTTCAGAGGAGTTGCACATTCGTTGAACCCTAC 667
Query 602 CAACAATCTGGTTTTGAAAGTTCTTTCAGCCTCTCCCTCGGCTTATTCTGCTAACCCAAG 661
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 668 TAACAATCTGGTTTTGAAAGTTCTTTCAGCCTCTCCATCAGCTTATTCTGCTAACCCAAG 727
Query 662 CTCGAAGTTGTCTAGTcccccccAGCTCACTGGGTCTGCAATTTCGCTAGTCTCTGTCAT 721
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 728 CTCGAAGTTGTCTAGTCCCCCCCAGCTCACTGGGTCTTCAATTTCGCTAGTCTCGGTCAT 787
Query 722 GCAGGCCAGGAACAATGCTAGGGTTGTGATCTCAGGCTCTTTGCAGTTGTTTAGCGATAG 781
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 788 GCAGGCCAGGAACAATGCTAGGGTTGTGATCTCAGGCTCAGTGCAGTTGTTTAGCGATAG 847
Query 782 GTTAATCAGATCTGGTGTCCAGAAAGCAGGGAGTCCGAACCAATACGAAAAATCTGGCAA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GTTAATCAGATCTGGTGTCCAGAAAGCAGGGAGTCCGAACCAATACGAAAAATCTGGCAA 907
Query 842 CGAACAGTTTGTGACTGAACTAAGCAAATGGGTCTTCCACGAAAGGGGCCATCTGAAGGC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CGAACAGTTTGTGACTGAACTAAGCAAATGGGTCTTCCACGAAAGGGGCCATCTGAAGGC 967
Query 902 TGGTAGTCTTGTACACCATAGGGTTGGAGAAACAGATGAGCCAGCAATATATAGGATAAA 961
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 968 TGGTAATCTTGTACACCATAGGGTTGGAGAAACAGATGAGCCAGCTATATATAGGATAAA 1027
Query 962 GGATGACCTGGAATTTTCTGTAGAGATATATGAGTGGTCAGGAAAGAGCTGGGAGCCGTA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GGATGACCTGGAATTTTCTGTAGAGATATATGAGTGGTCAGGAAAGAGCTGGGAGCCGTA 1087
Query 1022 TGTTGCTAACGATGTGCAGGTTCAGTTTTACATGATGAGCCCGTATGTGTTGAAAACCCT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 TGTTGCTAACGATGTGCAGGTTCAGTTTTACATGATGAGCCCGTATGTGTTGAAAACCCT 1147
Query 1082 GTCAACAGACAAGAAGGGTCTGTTTCATACATCTTTCAAGGTTCCTGATGTCTATGGTGT 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1148 GTCAACAGACAAGAAGGGTCTGTTTCATACATCTTTCAAGGTTCCTGATGTCTACGGTGT 1207
Query 1142 ATTCCAGTTTAAAGTTGAATATGAAAAGCTTGGATACAGTACATTATCTCTTTCAAAGCA 1201
|||||||||||| ||||||||||||||||| || |||| ||||||||||||||| |||||
Sbjct 1208 ATTCCAGTTTAAGGTTGAATATGAAAAGCTAGGCTACACTACATTATCTCTTTCGAAGCA 1267
Query 1202 GATTCCGGTGCGGCCTTACAGACACAATGAGTATGAGAGATTTATCCCAACTGCGTATCC 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 GATTCCGGTGCGGCCTTACAGACACAATGAGTATGAGAGATTTATCCCAACTGCGTATCC 1327
Query 1262 TTATTACGGAGCCTGCTTTACGACGATGGCTGGTTTCTTCGTATTCAGCTTCGTCTACCT 1321
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1328 TTATTATGGAGCCTGCTTTACGACGATGGCTGGTTTCTTCGTCTTCAGCTTCGTCTACCT 1387
Query 1322 CTACCATAAGTAGAATCCCTTAAATGGT 1349
||||||||||||||||||||||||||||
Sbjct 1388 CTACCATAAGTAGAATCCCTTAAATGGT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5