BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951571
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66670.1 | Symbols: | Protein of unknown function (DUF677) ... 1989 0.0
AT5G66660.1 | Symbols: | Protein of unknown function (DUF677) ... 1074 0.0
> AT5G66670.1 | Symbols: | Protein of unknown function (DUF677)
| chr5:26611258-26612891 REVERSE LENGTH=1516
Length=1516
Score = 1989 bits (1077), Expect = 0.0
Identities = 1205/1267 (95%), Gaps = 7/1267 (1%)
Strand=Plus/Plus
Query 1 TTAGCTCCACCAGTAATATCAATGGTGTTCTGTGGATTATTTTCGGAGCTCACGAAAGGA 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 53 TTAGCTCCACTAGTAATATCAATGGTGTTCTGTGGATTATTTTCGGAGCTCATAAAAGGA 112
Query 61 AACTCCAGTCCTAACAGCAACGGAACCAACACTTCACCGGCTAAAAGGGTCCAAACAAAT 120
|||||||| |||||| ||||||||| ||| ||||| |||||||| | |||||||||||
Sbjct 113 CACTCCAGTTCTAACAACAACGGAACTAACGTTTCACTGGCTAAAACGATCCAAACAAAT 172
Query 121 ATGCGGTCCCTATACTCATCAGACCTGAGTTCTTACACATCCGCTTGTAAAAAATACTCT 180
|| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 173 ATTCGGTCCCAATACTCATCAGACCTGAGTTCTTACGCATCCGCTTGTAAAAAATACTCA 232
Query 181 TCCCTCAAATCTTTTGATTCATCGCTTCACGAGCGAACCAACAGCATCATCAGCTCGCTC 240
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 233 TCCCTCAAATCTTTTGATTCATTGCTTCACGAGCGAACAAACAGCATCATCAGCTCGCTC 292
Query 241 GCTGCTCAGGCCAAGACTCAATCTTTAAACCTAGAGTCACTCATGGAGGTCTACGGATAT 300
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 293 GCTGCTCAGGCCAAGACTCGATCTTTAAACATAGAGTCACTCATGGAGGTCTACGGATAT 352
Query 301 CTTCTTGAACTAAACCAAGATACAGTAAGAGTCATCATTGAAAGCAAAGAAGACGTTTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 353 CTTCTTGAACTAAACCAAGATACAGTAAGAGTCATCATTGAAAGCAAAGAAGATGTTTTG 412
Query 361 AAGAACAATGATCTTAAGGCTTTGGTTGATGTCTATTTCAAAAGTACCTCCAAGACCTTA 420
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 413 AAGAACAATGATCTCAAGGCTTTGGTTGATGTCTATTTCAAAAGTACCTCTAAGACCTTG 472
Query 421 GACTTCTGCAATACCGTCGAGAAATGCGTCAAGAAAGCAGAAATAAGCCAACTTATCATT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 473 GACTTCTGCAATACCGTCGAGAAATGCGTCAAGAAAGCAGAAATAAGCCAGCTTATCATT 532
Query 481 CGATTCGCGGTGAAACAGTTCGAGACAGAAACGGTGGACACGGATCTTGGAGAAAGTAAG 540
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 533 CGATTCGCGGTGAAACAGTTTGAGACAGAAACGGTGGATACGGATCTTGGAGAGAGTAAG 592
Query 541 AAGAAGAAGTATGTAAAAACCTTGGAGGAGCTGAACAAGTTTAAAGCCATGGGAGACCCT 600
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 593 AAGAAGAAGTATGTGAAAACCTTGGAGGAGATGAACAAGTTTAAAGCCATGGGAGACCCT 652
Query 601 TTCGATGGCGAGTTCGTGACGCAGTACGAGTCCGTATACGA-GCAGCAGATTTTGCTTCT 659
|| ||||||||||||||||| |||||| |||| || ||||| | ||||| ||||||||||
Sbjct 653 TTTGATGGCGAGTTCGTGACTCAGTACAAGTCTGTCTACGATG-AGCAGGTTTTGCTTCT 711
Query 660 GGACGAGTTGCGTAAGCTGAAAGTAAAGCTTGGTAAGAAACAGAGGAATATAAAGACATG 719
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 712 GGACGAGTTGCGTAAGCTGAAAGTAAAGCTTGGTAAGAAACTGAGGAATATAAAGACATG 771
Query 720 GAGGATATTGTCAAATGTGGTTTTCGTGACTGCGTTTGTGACTGTATTTGTCTTATCGGT 779
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 772 GAGGATATTGTCAAATGTGGTTTTCGCCACTGCGTTTGTGACTGTATTTGTCTTATCGGT 831
Query 780 GGTTGCGGCAGCAATGATGGCACCTCCGGTATTGAGTGCGGTTGCGTCTGGATTGACCAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GGTTGCGGCAGCAATGATGGCACCTCCGGTATTGAGTGCGGTTGCGTCTGGATTGACCAC 891
Query 840 ACCGATTGAGGTTGTGGGAATATGGTGTAACAAGATGTGGAAGGAGTACGAGAAAGCTGT 899
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 892 ACCGATTGAGGTTGTGGGAATGTGGTGTAACAAGATGTGGAAAGAGTATGAGAAAGCTGT 951
Query 900 GAAGAGACAGAGAGGTTTGGTTTTAACAATGGAGCTTGGGGTGCAAGCTAACAATGTAAC 959
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 952 GAAGAGACAGAGAGGTTTGGTTTTAACAATGGAACTTGGGGTGCAAGCAAACAATGTAAC 1011
Query 960 GATGGTAAATATAAAATTCGAAGTTGAAAACCTGAGCATAAGGATCTCATCGATTCTGAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GATGGTAAATATAAAATTCGAAGTTGAAAACCTGAGCATAAGGATCTCATCGATTCTGAA 1071
Query 1020 GACCGTAGA-CTTTGCTGTGGAGAGAGAAGAAAATGAAATGGCCACGAGATTTGCGATGC 1078
|||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1072 GACCGT-GAACTTTGCTGTGGACAGAGAAGAAAATGAAATGGCGACGAGATTTGCGATGC 1130
Query 1079 AAGAAATCAAGAAGAAAGTAGAAGGGTTTACTGAAAAAATCGAGGAAGTTGGAGAAAGAG 1138
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1131 AAGAAATAAAGAAGAAAGTAGAAGGGTTTACTGAAAAAATCGAGGAAGTTGGTGAAAGAG 1190
Query 1139 CAGCCAAGTGTAGCAAACTCATCGCGTTGGGGAGACTTGTAGTTCTGGGACACATCCTTA 1198
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CGGCTAATTGTAGCAAACTCATCGCGTTGGGGAGACTTGTAGTTCTGGGACACATCCTTG 1250
Query 1199 GTTTACAGATCGTAGAAGGAGGAGCTGCAAATACAATTATCAGTGGCGTTTAAAAGACAT 1258
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1251 GTTTACACATCGTAGAAGGAGGAGCTGCAAATA---TTATCAGTAGCGTTTAAAAGACAT 1307
Query 1259 TGATGTT 1265
||| |||
Sbjct 1308 TGACGTT 1314
> AT5G66660.1 | Symbols: | Protein of unknown function (DUF677)
| chr5:26609308-26610504 REVERSE LENGTH=1197
Length=1197
Score = 1074 bits (581), Expect = 0.0
Identities = 1005/1206 (83%), Gaps = 43/1206 (4%)
Strand=Plus/Plus
Query 22 ATGGTGTTCTGTGGATTATTTTCGGAGCTCACGAAAGGA-AACTCCAGTCCTAACAGCAA 80
|||| ||||||||||| || || ||||||| ||| ||| || |||||| | || || ||
Sbjct 1 ATGGAGTTCTGTGGATGCTTGTCAGAGCTCATGAATGGAGAA-TCCAGTTCAAAGAGGAA 59
Query 81 CGGAACCAA-CACTTCACCGGCTAAAAG-GGTCCA-AACAAATATGCGGTCCCTATACTC 137
||| ||||| ||||| ||||| | |||| ||| || ||| |||||||||| ||||||
Sbjct 60 CGG-ACCAAGCACTTTACCGG-TTAAAGAGGT-CAGGACAGATATGCGGTCTAAATACTC 116
Query 138 ATCAGACCTGAGTTCTTACACATCCGCTTGTAAAAAATACTCTTCCCTCAAATCTTTTGA 197
||| ||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 117 ATCTGACCTAAGTTCTTACACATCCGCTTGTAAAAAAGACTCCAACCTCAAATCCTTTGA 176
Query 198 TTCATCGCTTCACGAGCGAACCAACAGCATCATCAGCTCGCTCGCTGCTCAG-GCCAAGA 256
||| ||||||||| | |||||||||| ||||||| |||||||||||||| | ||| |||
Sbjct 177 TTCTTCGCTTCACCAACGAACCAACATAATCATCACCTCGCTCGCTGCTC-GAGCCGAGA 235
Query 257 CTCAATCTTTAAACCTAGAGTCACTCATGGAGGTCTACGGATATCTTCTTGAACTAAACC 316
||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||
Sbjct 236 CTCAATCTTTAAACCTAGACTCACTCATGGAGGTTTACGGATTTCTGCTTGAACTAAACC 295
Query 317 AAGATACAGTAAGAGTCATCATTGAAAGCAAAGAAGACGTTTTGAAGAACAATGATCTTA 376
|| || ||||||||||||| |||||||||| |||||| || | ||||||||| |||||||
Sbjct 296 AAAATGCAGTAAGAGTCATTATTGAAAGCAGAGAAGATGTCTGGAAGAACAAAGATCTTA 355
Query 377 AGGCTTTGGTTGATGTCTATTTCAAAAGTACCTCCAAGACCTTAGACTTCTGCAATACCG 436
|| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 356 AGTCTTTGGTTGATGTCTACTTCAAAAGTACTTCCAAGACCTTAGATTTCTGCAATACCG 415
Query 437 TCGAGAAATGCGTCAAGA-AAGCAGAAATAAGCCAACTTATCATTCGATTCGCGGTGAAA 495
||||||| || ||||||| || ||||||| ||||||||||||||||| ||||||||||||
Sbjct 416 TCGAGAATTGTGTCAAGAGAA-CAGAAATCAGCCAACTTATCATTCGGTTCGCGGTGAAA 474
Query 496 CAGTTCGAGACAGAAACGGTGGACACGGATCTT---GGAGA-AAGTAAGAAGAAGAAGTA 551
||||||||| |||| | ||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 475 CAGTTCGAGGCAGAGTCAGTGGACACGGATCTTGGAGGAGATAAG-AAGAAGAAGAAGTA 533
Query 552 TGTAAAAACCTTGGAGGAGCTGAACAAGTTTAAAGCCATGGGAGACCCTTTCGATGGCGA 611
| |||||||||||||||||||| || |||||||| |||||||||||||| ||||| ||
Sbjct 534 TACGAAAACCTTGGAGGAGCTGAATAAATTTAAAGCTATGGGAGACCCTTTTGATGGTGA 593
Query 612 GTTCGTGACGCAGTACGAGTCCGTATACGAGCAGCAGATTTTGCTTCTGGACGAGTTGCG 671
|| ||||| |||| ||| || || || || |||||| ||||| |||| || ||||||||
Sbjct 594 ATTGGTGACTCAGTTCGACTCGGTCTATGATCAGCAGGTTTTGTTTCTTGAGGAGTTGCG 653
Query 672 TAAGCTGA-AAGTAAAGCTTGGTAAGAAACAGAGGAATATAAAGACATGGAGGATATTGT 730
||||| || ||| |||||||| |||||| ||||||||| |||| |||| ||||| |||
Sbjct 654 TAAGCAGAGAAG-AAAGCTTGATAAGAAGCAGAGGAATGTAAAAACATTGAGGACGGTGT 712
Query 731 CAAATGTGGTTTTCG-TGACTGCGTTTGTGACTGTAT-TTGTCTTATCGGTGGTTGC-GG 787
| || ||| |||||| | ||||||| ||| |||| | |||||||||| ||||||||
Sbjct 713 CTAACGTGTTTTTCGCT-ACTGCGTATGTCTCTGT-TCTTGTCTTATCTGTGGTTGCAAC 770
Query 788 CAGCAATGATG-GCACCTCCGGTATTGAGTGCGGTTGCGTCTGGATTGACCACACCGATT 846
|| |||||| | ||||| || || || |||||||||| ||||||| |||| ||||||||
Sbjct 771 CA-CAATGA-GCGCACCGCCAGTGGTGTGTGCGGTTGCCTCTGGATCGACCGCACCGATT 828
Query 847 GAGGTTGTGGGAATATGGTGTAACAAGATGTGGAAGGAGTACGAGAAAGCTGTGAAGAGA 906
||| | |||| ||||| || | |||||||||| |||||||||||||||||||||||
Sbjct 829 GAGATAACAGGAAAATGGTTTAGCCAGATGTGGAAAAAGTACGAGAAAGCTGTGAAGAGA 888
Query 907 CAGAGAGGTTTGGTTTTAACAATGGAGCTTGGGGTGCAAGCTAACAATGTAA-CGATGGT 965
|||||||| |||||||| || |||||| | | ||||||| |||||||| || |||||
Sbjct 889 CAGAGAGGATTGGTTTTGACGATGGAGAGTAGAGTGCAAGTTAACAATG-AAGCGATGA- 946
Query 966 A-AATATAAAATTCGAA-GTTGAA-AACCTGAGCA-TAAGGATCTCATCGATTCTGAAGA 1021
| ||||||| || || | ||||| ||| |||| | | || | || ||||||||| |||
Sbjct 947 AGAATATAAGAT-CGGATGTTGATGAAC-TGAGAAGTTGGGTT-TCGTCGATTCTGGAGA 1003
Query 1022 CCGTAGACTTTGCTGTGGAGAGAGAAGAA-AATGAA-ATGGCCACGAGATTTGCGATGCA 1079
| || |||||||||||||||||||||||| || || | ||| | | || ||||||||||
Sbjct 1004 CTGTGGACTTTGCTGTGGAGAGAGAAGAAGAA-GAGGA-GGCGATGGGACTTGCGATGCA 1061
Query 1080 AGAAATCAAGAAGAAAGTAGAAGGGTTTACTGAAAAAATCGAGGAAGTTGGAGAAAGA-G 1138
|| |||||||||| | ||||| ||||||||||| ||||| || |||||||| |||| | |
Sbjct 1062 AGGAATCAAGAAGCATGTAGATGGGTTTACTGAGAAAATGGAAGAAGTTGGTGAAA-ATG 1120
Query 1139 CAGCCAAGTGTAGCAAACTCATCGCGTTGGGGAGACTTGTAGTTCTGGGACACATCCTTA 1198
| || |||||||||||| |||| || ||||| |||||| | ||||||| ||||||||||
Sbjct 1121 CGGCTAAGTGTAGCAAATTCATTGCTTTGGGAAGACTTCTTGTTCTGGAACACATCCTTG 1180
Query 1199 GTTTAC 1204
| ||||
Sbjct 1181 GGTTAC 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62650280160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5