BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951572
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66660.1 | Symbols: | Protein of unknown function (DUF677) ... 1801 0.0
> AT5G66660.1 | Symbols: | Protein of unknown function (DUF677)
| chr5:26609308-26610504 REVERSE LENGTH=1197
Length=1197
Score = 1801 bits (975), Expect = 0.0
Identities = 1125/1199 (94%), Gaps = 4/1199 (0%)
Strand=Plus/Plus
Query 22 ATGGAACTCTGTGGATGCTTGCCAGAGCTCATGACTGGAGAATCCAGTTCAAAGAGGAAC 81
||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGAGTTCTGTGGATGCTTGTCAGAGCTCATGAATGGAGAATCCAGTTCAAAGAGGAAC 60
Query 82 GGACCAAACACTTTACCGGTTAAAGCTGTCCGGACAGATATGCGGTCTAAATACTCATCT 141
||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 GGACCAAGCACTTTACCGGTTAAAGAGGTCAGGACAGATATGCGGTCTAAATACTCATCT 120
Query 142 GACCTAAGTTCTTACACATCCGCTTGTATGAAAGACTCCAACCTCAAATCCTTTGATTCT 201
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GACCTAAGTTCTTACACATCCGCTTGTAAAAAAGACTCCAACCTCAAATCCTTTGATTCT 180
Query 202 TCACTTCACCAACGAACCAACATAATCATCACCTCCCTCGCTGCTCGAGCCGAGACTCAA 261
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TCGCTTCACCAACGAACCAACATAATCATCACCTCGCTCGCTGCTCGAGCCGAGACTCAA 240
Query 262 TCTTTGAACCTAGACTCACTCATGGAGGTTTACGGATTTCTGCTTGAACTAAACCAAAAT 321
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTTTAAACCTAGACTCACTCATGGAGGTTTACGGATTTCTGCTTGAACTAAACCAAAAT 300
Query 322 GCAGTAAGAGTCATCATTGAAAGCAGAGAAGATGTGTGGAAGAACAAAGATCTTAAGTCT 381
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GCAGTAAGAGTCATTATTGAAAGCAGAGAAGATGTCTGGAAGAACAAAGATCTTAAGTCT 360
Query 382 TTGGTTGATATCTACTTTAGAAGTACCTCCAAGACCTTAGATTTCTGCAATACTGTCGAG 441
||||||||| ||||||| | |||||| |||||||||||||||||||||||||| ||||||
Sbjct 361 TTGGTTGATGTCTACTTCAAAAGTACTTCCAAGACCTTAGATTTCTGCAATACCGTCGAG 420
Query 442 AACTGCGTCAAGAGAACAGAAATTAGCCAACTTATCATTCGGTTCGCGGTGAAACAGTTC 501
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTGTGTCAAGAGAACAGAAATCAGCCAACTTATCATTCGGTTCGCGGTGAAACAGTTC 480
Query 502 GAGACAGAGTCAGAGGACACGGATCTTGGAGAAAATAACAAGAAGAAGAAGTATGCGAAA 561
||| ||||||||| ||||||||||||||||| | |||| ||||||||||||||| |||||
Sbjct 481 GAGGCAGAGTCAGTGGACACGGATCTTGGAGGAGATAAGAAGAAGAAGAAGTATACGAAA 540
Query 562 ACCTTGGAGGAGCTGAATAAGTTTAAAGCCATGGGAGACCCTTTTAATGGCGAGTTCGTG 621
|||||||||||||||||||| |||||||| ||||||||||||||| |||| || || |||
Sbjct 541 ACCTTGGAGGAGCTGAATAAATTTAAAGCTATGGGAGACCCTTTTGATGGTGAATTGGTG 600
Query 622 ACTCAGTTCGATTCCGTCTACGACCAGCAGGTTTTGCTTT-TAGAGGAGTTGCGTAAGCA 680
||||||||||| || ||||| || |||||||||||| ||| | |||||||||||||||||
Sbjct 601 ACTCAGTTCGACTCGGTCTATGATCAGCAGGTTTTG-TTTCTTGAGGAGTTGCGTAAGCA 659
Query 681 GAGAAAAAAGCTTGATAAGAAACAGAGGAATGTGAAGACATTGAGGACGCTGTCTAATGT 740
||||| ||||||||||||||| ||||||||||| || |||||||||||| ||||||| ||
Sbjct 660 GAGAAGAAAGCTTGATAAGAAGCAGAGGAATGTAAAAACATTGAGGACGGTGTCTAACGT 719
Query 741 GTTTTTCGCTACTGCGTTTGTCTCTGTTCTTGTCTTATCAGTGGTTGCAACCACAATGAG 800
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GTTTTTCGCTACTGCGTATGTCTCTGTTCTTGTCTTATCTGTGGTTGCAACCACAATGAG 779
Query 801 TGCGCCGCCAGTGGTGAGTGCGGTTGCCTCTGGATCGACCGCACCGATTGAGATAACAGG 860
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGCACCGCCAGTGGTGTGTGCGGTTGCCTCTGGATCGACCGCACCGATTGAGATAACAGG 839
Query 861 GAAATGGTTTAGCCAGATGTGGAAAAAGTACGAGAGAGCTGTGAAGAGACAAAGAGGTTT 920
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 840 AAAATGGTTTAGCCAGATGTGGAAAAAGTACGAGAAAGCTGTGAAGAGACAGAGAGGATT 899
Query 921 GGTTTTGTTGATGGAGAGTAGAGCACAAGTTAACAATGAAGCGATGAAGAATGTAAGATC 980
||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 900 GGTTTTGACGATGGAGAGTAGAGTGCAAGTTAACAATGAAGCGATGAAGAATATAAGATC 959
Query 981 GGAAGTTGATGAACTGAGAA-TTAGGGTTTCGTTGATTCTGGAGACTGTGGAATTTGCTG 1039
||| |||||||||||||||| || ||||||||| |||||||||||||||||| |||||||
Sbjct 960 GGATGTTGATGAACTGAGAAGTT-GGGTTTCGTCGATTCTGGAGACTGTGGACTTTGCTG 1018
Query 1040 TTGAGAGAGAAGAAGAAGAGGAGGCGACGAGACTTGCGATGCAAGGAATCAAGAAGCATG 1099
| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1019 TGGAGAGAGAAGAAGAAGAGGAGGCGATGGGACTTGCGATGCAAGGAATCAAGAAGCATG 1078
Query 1100 TAGATGGGTTTACTGAGAAAATGGAAGAAGTTGGTGAAAATGCGGCTAAGTGTTGCAAAT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1079 TAGATGGGTTTACTGAGAAAATGGAAGAAGTTGGTGAAAATGCGGCTAAGTGTAGCAAAT 1138
Query 1160 TCATTGCTTTGGGAAGACTTCTAGTTCTGGAACACATCCTTAGGTTACCCGCTAATTGA 1218
|||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 1139 TCATTGCTTTGGGAAGACTTCTTGTTCTGGAACACATCCTTGGGTTACCTGCTAATTGA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5