BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951577
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66631.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3016 0.0
> AT5G66631.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26596207-26598192 FORWARD LENGTH=1986
Length=1986
Score = 3016 bits (1633), Expect = 0.0
Identities = 1872/1989 (94%), Gaps = 10/1989 (1%)
Strand=Plus/Plus
Query 22 ATGTTTTCTCTCATCTTCTCGAACCCTGTCAAGCCTTTTAACTCTGTGATTATCTATCAA 81
||||||||| |||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 1 ATGTTTTCTATCATCTTCTCGAACCCTGTCAAGCCTTTTAACTCCGTAATTATCCATCAA 60
Query 82 ATTCGATTCTTTTCCCGTGACCCATTCCCCAACAAAGTCCAACACTACCTTTACCGAGCA 141
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 61 ATTCGATTCTTTTCCCGTGACCCATTCCCCAACAAAGTCCAGCACTACCTTTACAGAGCA 120
Query 142 AACCTCATCGACTCTATCCGTCTCAGCCTCCGCTCCACAACAACCTCAGACCCGACGCTT 201
||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||
Sbjct 121 AACCTCATCGACTCTATCCGTCTTAGCCTCCGCTCCCCAACAACCTCAGACAGGACACTA 180
Query 202 CCTTCTCTTCTAGACCACCGTCTTCTCGACTCCTTTGTCGTCAAGAACGCTTTACGCTCA 261
||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 GCTTCTCTTCTAAACCACCGTCTTCTCGATTCCTTTGTCGTCAAAAACGCTTTACGCTCA 240
Query 262 TCTCCTTCCGTCG-CTTCTGCTTGGTCTATCTTCAAAACTCTTAGAGGa-aaaaaaCCTC 319
|||||||| || | ||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 241 TCTCCTTCTGT-GTCTTCTGCTTGGTCTATCTTCAAAACTCTTAG-TCACAAAAGCCCTC 298
Query 320 ACTTTTCTTTTGAAACTGAGACACTTCACGCTTTTGCCACTGTTCTTGCAAAGTTTCAGC 379
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 GCTTTTCTTTTGAAACTGAGACACTTCACGCCTTTGCCACTGTTCTTGCAAAGTTTCAGC 358
Query 380 GATCTTCGGAGCTTAACTCTCTTATTGGACTTGTCAATGCTGGGAAATTC-GGCCAA-GT 437
||||||| |||||||||||||| |||||| ||||||||||| |||||||| || || ||
Sbjct 359 GATCTTCAGAGCTTAACTCTCTAATTGGAGTTGTCAATGCTTGGAAATTCAGG--AATGT 416
Query 438 TCATTTCAGCTTCATGAATCTCATGAACTTGTACGCGACTGCTGGTGATTTCGACTCGGT 497
|||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 417 TCATTTCAGCTTTATGAATCTCTTGAACTTGTATGCAACTGCTGGTGATTTCGACTCGGT 476
Query 498 TCTTAAGACGTGGGACGAGTATAGATTCTCAGGAGAGGAGAAGAAAGGCTGCACTGAGTC 557
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 TCTTAAGACGTGGGACGAGTATAGATGCTCAGGAGAGGAGAAGAAAGGCTGCACTGAGTC 536
Query 558 CTATAACATTGTTATGCAAGTTTACATGACTTTAGGTAAAGATTCTGAGGCTGTTCAGAC 617
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 537 TTATAACATTGTGATGCAAGTTTACATGACTTTAGGTAAAGACTCTGAGGCTGTACAGAC 596
Query 618 TTTTGATCAGATTATCAACCAAGGAGGGATTCCGAATTCAAGAACATTCACTATTATGAT 677
|||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 597 TTTTGATCAGATAATCAACGAAGGAGGGATTCCTAATTCAAGAACATTCACTATTATGAT 656
Query 678 TGAGCATCTTGTGAAATTGGGGAATCTTGATGCAGCCATGAAGGTTTTTGAGACATTGCC 737
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 657 TGAGCATCTTGTGAAATTGGGGAATCTTGATGCAGCCATGAAGATTTTTGAGACCTTGCC 716
Query 738 TTTGATGAGGATTACGCGGACTCTGAAGCATTATTCGGTTTTGGTTGAAGCGTTTGTCGA 797
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 717 TTTGATGAGGATTACGCGGACTCTGAAGCATTATTCGGTTTTGGTTGAAGCCTTTGTTGA 776
Query 798 TGCGCAACGGTTTGGTGAAGTCAAGACTCTGCTTGCTGAGATGAAAGCTGACGGGAAGTT 857
||| |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 777 TGCACAACGGTTTGATGAAGTCAAGACTCTGATTGCTGAGATGAAATCTGATGGGAAGTT 836
Query 858 TCCGAGTAGACGCATGCTTGAGCCTCTGAAACTCATGAGGGAGGCTGGTTTTGAAC-TGG 916
|| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |
Sbjct 837 CCCTAGTAGACGCATGCTTGAGCCCCTGAAACGCATGAGGGAGGCTGGTTTTGAACAT-G 895
Query 917 AAACAGAGGAGTTCTTGAGAGAAATGTTGCCAGATGAGAGAATTAAGGATATTTCTATTT 976
||||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
Sbjct 896 AAACAGAGGAGTTTTTGAGAGAAATGTTGCCGGATGAGAGGATCAAGGACATTTCTATGT 955
Query 977 ATTCTATGGATAATCCCAGTGATAGCGAAGAAGAAGGAGATGAGCACAATGATAACGTTA 1036
||||||||||||||||||| ||||||||||| |||||||| ||| |||| ||| | ||||
Sbjct 956 ATTCTATGGATAATCCCAGCGATAGCGAAGACGAAGGAGACGAGTACAAAGATGATGTTA 1015
Query 1037 ATGAAGGTCAGGTTAAGTTGAAGCCATGGCTGGATCCAAAAGCTTTAGCAACTTCGTTAA 1096
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATGAAGCTCAAGTTAAGTTGAAGCCATGGCTGGATCCAAAAGCTTTAGCAACTTCGTTAA 1075
Query 1097 AGAAGTGGAGCTCTGATGCAGTCACTGCTTTGGAAGAAGCTAACTTTGTCTGGACAAATC 1156
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1076 AGAAGTGGAGCTCTGATGCAGTCACTGCTTTGGAAGAAGCTAACTTCGTTTGGACAAATC 1135
Query 1157 TATTGGTCTGCAAGATGCTAAGAAACTTCAGATCACCTGAAACAGCATGGAGTTTCTTCT 1216
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1136 TATTGGTCTGCAAGATGCTAAGAAACTTCAGAGCACCTGAAACAGCATGGAGTTTCTTCT 1195
Query 1217 GCTGGGTGGCGATTCAACCCGGGTTCACCCACGATGCCTATACGGTTGAGAGAATGATGG 1276
||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||
Sbjct 1196 GCTGGGTGGCGATTCAACCAGGATTCACCCACGACGCCTATACGATTGAGAGAATGATGG 1255
Query 1277 CTATGTTAGCACGCAATGGCCAAGTTGAACTGGTCGATAAGCTCATCTCGAAAGTGAGAA 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CTATGTTAGCACGCAATGGCCAAGTTGAACTGGTCGATAAGCTCATCTCGAAAGTGAGAA 1315
Query 1337 TGGAAGGGATCAAATTACCATTCAGCACCATCAGACTAATCATTGATCTCTACGGAATTT 1396
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1316 TCGAAGGGATCAAATTACCATTCAGCACCATCAGGCTGATCATTGATCTCTACGGAATTT 1375
Query 1397 CAAAGAAACCGGAAGCAGCCATCAAGGTTTTCCGCCAAGACAGAACTCTCTGCGGTTCGA 1456
|||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 1376 CAAAGAAACCGGAAGCAGCCATCAAGGTTTTCAACGAAGACAGAACACTCTGCGGTTCGA 1435
Query 1457 TATCGGATTTCAACCTCATGCTGTTGTACTCATCCCTCTTGAGAACATTAACAAAGTGCA 1516
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1436 TATCTGATTTCAACCTCATGCTGTTGTACTCATCCCTCTTGAGAACATTAACAAAATGCA 1495
Query 1517 AGAGAAACGCAGAAGCGTTGGAAACGCTAGAAGATATGATTTTGACGGGAGTTTCTCCCG 1576
||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1496 AGAGAAACGCAGAGGCTTTAGAAACGCTAGAAGATATGATGTTGACAGGAGTTTCTCCTG 1555
Query 1577 ATATCCAGACGTTCTCTGGTCTGATGTATCACTTTGCATTGCAGGGAGAGATTCAGACAG 1636
|||||||||||||||| ||| | ||||| |||||||||||||||||||||||||| ||||
Sbjct 1556 ATATCCAGACGTTCTCGGGTTTAATGTACCACTTTGCATTGCAGGGAGAGATTCAAACAG 1615
Query 1637 TTGAGAGACTTTTCTCAATGGTGAGACAGATCGGTCTTGACCCTGATCCTTACATGTTAA 1696
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 1616 TTGAGAGACTTTTCTCAATGGTGAGACAGATTGGTCTTGAACCTGATCCGTACATGTTAA 1675
Query 1697 AGCTTCTTGTTCAAGCGTATTGCAGATGCGAAAGATCAGTGCTTGCTTACAGAGTGTTCC 1756
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 AGCTTCTAGTTCAAGCGTATTGCAGATGCGAAAGATCAGTGCTTGCTTACAGAGTGTTCC 1735
Query 1757 AAGACATGAAAGATTCGAATCTGATGCCAGACAAAGAGACGAAAGAGCTGCTTGTCAAGA 1816
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct 1736 AAGACATGAAAGATTCGAATCTGATGCCTGACAGAGAGACGAAAGAGCTGCTTGTTAAGA 1795
Query 1817 GTTTGTGGAGAGAAGAGAAGCGAAAAGAGGCTGCTGCGGTTGAAGAGAGCTACGAGGAAG 1876
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1796 GTTTGTGGAGAGAAGAGAAGCGAAAAGAAGCGGCTGCGGTTGAAGAGAGCTACGAGGAAG 1855
Query 1877 AGAATAATAACAAGAATAGTAGTAACGTTTCGCGTTTGGCGTTGAAGGGTCATGTGTGGA 1936
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1856 AGAATGATAACAAGAATAGTAGTAACGTTTTGCGTTTGGCGTTGAAGGGTCATGTGTGGA 1915
Query 1937 CCATTAGTTCTACAGACATTTCCCGAGTCTACAATCTCTACCGCGATTGTGTTTTGAAAA 1996
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1916 CCATTAGTTCTACAGACATTTCTCGAGTCTACAATCTCTACCGCGATTGTGTTCTGAAAA 1975
Query 1997 CTTCGACTT 2005
|||||||||
Sbjct 1976 CTTCGACTT 1984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5