BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951584
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66570.1 | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 ... 1808 0.0
AT3G50820.1 | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II su... 966 0.0
> AT5G66570.1 | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1
| PS II oxygen-evolving complex 1 | chr5:26568653-26570278
FORWARD LENGTH=1244
Length=1244
Score = 1808 bits (979), Expect = 0.0
Identities = 1067/1110 (96%), Gaps = 3/1110 (0%)
Strand=Plus/Plus
Query 14 TGTGGCCATGGCAGCCTCTCTCCAATCCACCGCCACATTCCTCCAGTCGGCGAAGATCGC 73
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 85 TGTGGCCATGGCAGCCTCTCTCCAATCCACCGCTACATTCCTCCAGTCGGCGAAGATCGC 144
Query 74 CACCGCTCCTTCTCGCGGCAGTGCTCACCTCCGGTCTACTCAATCCGTCGGCAAATCTTT 133
|||||||||||||||||| ||| |||||||||| || |||||| ||||||||||||||||
Sbjct 145 CACCGCTCCTTCTCGCGGAAGTTCTCACCTCCGATCGACTCAAGCCGTCGGCAAATCTTT 204
Query 134 CGGGCTAGATACTTCCTCTGCTCGCCTCACTTGCTCCTTCCAATCTGACTTCAAGGACTT 193
||||| || |||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 205 TGGGCTCGAAACTTCCTCGGCTCGCCTCACTTGCTCCTTCCAGTCTGACTTTAAGGACTT 264
Query 194 CGCCGGTAAATGCTCCGACGCTGTCAAAATCGCTGGATTCGCTCTTGCCACCTCTGCTCT 253
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 265 CACCGGTAAATGCTCCGACGCTGTCAAAATCGCCGGATTCGCTCTTGCCACCTCTGCTCT 324
Query 254 CGTCGTCTCGGGAGCAAGTGCAGAGGGAGCTCCAAAGAGACTGACCTACGATGAGATTCA 313
||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct 325 CGTCGTCTCGGGAGCAAGTGCGGAGGGAGCTCCAAAGAGATTGACCTATGATGAGATTCA 384
Query 314 GAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCCCAACTATTGA 373
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 385 GAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCCCTACTATTGA 444
Query 374 CGGTGGCTCTGAGACATTCTCGTTCAAGCCCGGAAAGTACGCAGGCAAGAAGTTCTGCTT 433
||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 445 CGGTGGCTCTGAGACTTTCTCGTTCAAACCCGGAAAGTATGCAGGAAAGAAGTTCTGCTT 504
Query 434 CGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCGCCTCCTGAGTT 493
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 505 CGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCTCCTCCAGAGTT 564
Query 494 CCAGAACACCAAGCTCATGACCCGTCTCACCTACACCCTTGACGAGATCGAAGGACCCTT 553
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 565 CCAGAACACAAAGCTCATGACCCGTCTTACCTACACCCTTGACGAGATCGAAGGACCCTT 624
Query 554 TGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTACGCTGC 613
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 625 CGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTATGCTGC 684
Query 614 AGTCACAGTCCAGCTTCCAGGAGGTGAGCGTGTGCCATTCCTCTTT-ACAGTCAAACAGC 672
|||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 685 AGTCACAGTCCAACTTCCAGGAGGTGAACGTGTGCCATTCCT-TTTCACAGTCAAACAGC 743
Query 673 TTGACGCCTCAGGCAAACCAGATAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGTG 732
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 744 TTGACGCCTCAGGCAAACCAGACAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGTG 803
Query 733 GCTCTTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCCGTGG 792
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 804 GCTCTTCCTTCTTGGACCCAAAGGGCCGTGGTGGATCCACAGGATATGACAACGCCGTGG 863
Query 793 CATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTGTAAAGGAGAATGTGAAGAACA 852
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 864 CATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTGTAAAGGAGAACGTGAAGAACA 923
Query 853 CGGCAGCTTCGGTGGGAGAGATCACTCTGAAAGTGACAAAGAGCAAGCCGGAGACAGGAG 912
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 CTGCCGCTTCAGTGGGAGAGATCACTCTGAAAGTGACAAAGAGCAAGCCGGAGACAGGAG 983
Query 913 AGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCAGATACTGACTTGGGTGCTAAGGTAC 972
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 984 AGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCGGATACTGACTTGGGTGCTAAGGTAC 1043
Query 973 CAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATTATA 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATTATA 1103
Query 1033 TTT-CTGTTGATTGTGTTTGATGATAATGACAACATCTTTTGATGCTTTCTTCGTTTATC 1091
||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1104 TTTTCCGTTGATTGTGTTTGATGATAATGATAACATCTTTTGATGCTTTCTTCGTTTATC 1163
Query 1092 TCTCTTATAAAAAATGCACATGCCTAAGAT 1121
||||||||| ||||||||||||||||||||
Sbjct 1164 TCTCTTATATAAAATGCACATGCCTAAGAT 1193
> AT3G50820.1 | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II
subunit O-2 | chr3:18890876-18892426 REVERSE LENGTH=1243
Length=1243
Score = 966 bits (523), Expect = 0.0
Identities = 856/1016 (84%), Gaps = 26/1016 (3%)
Strand=Plus/Plus
Query 20 CATGGCAGCCTCTCTCCAATCCACCGCCACATTCCTCCAGTCGGCGAAGATCGCCACCGC 79
||||||| | ||||||||| || |||| || || || || |||||||||| ||| | |
Sbjct 115 CATGGCAACTTCTCTCCAAGCCGCCGCAACTTTTCTTCAACCGGCGAAGATTGCCGCTTC 174
Query 80 TCCTTCTCGCGGCAGTGCT-CACCTCCGGTC-TACTCAATCCGTCGGCAAAT-CTTTCGG 136
||||||| | | | || | || ||||| || || ||| |||| ||||| | |||| ||
Sbjct 175 TCCTTCT--C-GTAATG-TCCATCTCCGATCAAAC-CAAACCGTGGGCAAGTCCTTT-GG 228
Query 137 GCTAGA-TACTTCCTC-TGCTCGCCTCACTTGCTCCT-TCCAATCTGACTTCAAGGACTT 193
| |||| | ||| | | ||| | ||||| |||| || |||| |||||| |||| |||||
Sbjct 229 GTTAGACT-CTT-CACAAGCTAGGCTCACGTGCT-CTCTCCACTCTGACCTCAAAGACTT 285
Query 194 CGCCGGTAAATGCTCCGACGCTGTCAAAATCGCTGGATTCGCTCTTGCCACCTCTGCTCT 253
||| || |||||||||||||| | ||| ||||| || || ||||| ||||||||||||||
Sbjct 286 CGCTGGAAAATGCTCCGACGCCGCCAAGATCGCCGGTTTTGCTCTAGCCACCTCTGCTCT 345
Query 254 CGTCGTCTCGGGAGCAAGTGCAGAGGGAGCTCCAAAGAGACTGACCTACGATGAGATTCA 313
||| |||||||| || |||| |||||||| |||||||| || || ||||| ||||| ||
Sbjct 346 CGTTGTCTCGGGGGCCGGTGCGGAGGGAGCACCAAAGAGGCTAACGTACGACGAGATACA 405
Query 314 GAGCAAGACATACATGGAAGTGAAA-GGAACTGGAACGGCTAACCAGTGCCCAACTATTG 372
||||||||| |||||||| || ||| || || || ||||| |||||||| |||||||| |
Sbjct 406 GAGCAAGACTTACATGGAGGT-AAAGGGTACCGGTACGGCAAACCAGTGTCCAACTATCG 464
Query 373 ACGGTGGCTCTGAGACATTCTCGTTC-AAGCCCGGAAAGTACGCAGGCAAGAAGTTCTGC 431
| |||||||||||||||||||||||| ||| | || |||||| |||||||||||||||||
Sbjct 465 ATGGTGGCTCTGAGACATTCTCGTTCAAAG-CTGGTAAGTACACAGGCAAGAAGTTCTGC 523
Query 432 TTCGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCGCCTCCTGAG 491
|||||||| ||||||||||||||||||||||| || || |||||||| || || || ||
Sbjct 524 TTCGAGCCCACTTCCTTCACCGTCAAGGCAGATAGCGTCAGCAAGAATGCACCGCCGGAT 583
Query 492 TTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACCCTTGACGAGATCGAAGGACCC 551
||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||||
Sbjct 584 TTCCAAAACACCAAGCTCATGACCCGTCTCACTTACACACTCGATGAGATCGAAGGACCC 643
Query 552 TTTGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTACGCT 611
|| ||||||| ||||||||||||||| || ||||||||||||||||| ||||| |||||
Sbjct 644 TTCGAGGTTGGTTCAGACGGAAGCGTGAAGTTCAAGGAAGAAGATGGTATCGATTACGCA 703
Query 612 GCAGTCACAGTCCAGCTTCCAGGAGGTGAGCGTGTGCCATTCCTCTTTACAGTCAAACAG 671
|||||||||||||||||||| ||||| || || ||||| |||||||| || || || |||
Sbjct 704 GCAGTCACAGTCCAGCTTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCACGGTTAAGCAG 763
Query 672 CTTGACGCCTCAGGCAAACCAGATAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGT 731
|| || || ||||| ||||| || ||||||| || || ||||| |||||||||||||||
Sbjct 764 CTCGAGGCTTCAGGGAAACCCGAAAGCTTCAGTGGCAAGTTCTTAGTTCCATCGTACCGT 823
Query 732 GGCTCTTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCCGTG 791
||||| ||||| ||||||||||||||||||||||||||||| || || || || || |||
Sbjct 824 GGCTCGTCCTTTTTGGACCCAAAGGGTCGTGGTGGATCCACTGGGTACGATAATGCAGTG 883
Query 792 GCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCT-TGTAAAGGAGAATGTGAAGAA 850
|| ||||| || |||||||||||||||||||| ||||| | || ||| || || |||||
Sbjct 884 GCTTTGCCTGCCGGAGGCAGAGGAGACGAGGAAGAGCTATCCAA-GGAAAACGTCAAGAA 942
Query 851 CACGGCAGCTTCGGTGGGAGAGATCACTCTGAA-AGTGACAAAGAGCAAGCCGGAGACAG 909
|||||| ||||| || |||||||||||| |||| | | ||||||||||| ||||||||||
Sbjct 943 CACGGCGGCTTCCGTCGGAGAGATCACTTTGAAGA-TCACAAAGAGCAAACCGGAGACAG 1001
Query 910 GAGAGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCAGATACTGACTTGGGTGCTAAGG 969
| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1002 GTGAAGTGATCGGAGTGTTCGAGAGTCTTCAGCCATCGGATACTGACTTGGGTGCTAAGG 1061
Query 970 TACCAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCA-ACTTGAGTGAT-CAT 1023
||||||| |||||||||||||||||||| ||||| ||||| | ||||||||| |||
Sbjct 1062 TACCAAAAGATGTGAAGATCCAAGGGGTTTGGTACGGTCAGA-TTGAGTGATTCAT 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54969596775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5