BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951586
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66550.1 | Symbols: | Maf-like protein | chr5:26559584-2656... 1035 0.0
> AT5G66550.1 | Symbols: | Maf-like protein | chr5:26559584-26561216
REVERSE LENGTH=846
Length=846
Score = 1035 bits (560), Expect = 0.0
Identities = 639/677 (94%), Gaps = 6/677 (1%)
Strand=Plus/Plus
Query 1 GCTTAGAGCGCAACACCAAGATGACGACCAAGGCTATGGAGAGAGGATTTAAGCTGATTC 60
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 35 GCTTAGAGCACAACACCACGATGACGACCAAGGCCATGGAGAGAGGATTTAAGCTGATTC 94
Query 61 TGGGTTCTCAGTCGATGGCGAGAAAGAGGATTCTGGCTGAAATGGGATATGATTACACTA 120
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 95 TGGGTTCTCAATCCATGGCGAGAAAGAGGATTTTGGCTGAAATGGGATATGATTACACTA 154
Query 121 TCGTGACTGCAGACATTGATGAGAAAGCCATTAGGACAGAGAAGCCTGAAGATTTGGTTG 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 155 TCGTGACTGCAGACATTGATGAGAAAGCTATTAGGACAGAGAAGCCTGAAGATTTGGTTG 214
Query 181 TGGCTCTTGCTGAAGCCAAGGCAAATGAGATTATATCGAAATTGGGTGGTGAAAGCCAGT 240
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 215 TGGCTCTTGCTGAAGCCAAGGCAAATGAGATTATATCGAAATTGGGAGGTGAGAGCCAGT 274
Query 241 TTGCACAAGATCCTCAACCGACTCTGTTGATTACTGCAGACACTGTTGTTGTGTACAAAG 300
||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 275 TTGCAAAAGATCCTCAACCAACTCTTTTGATTACTGCAGACACTGTTGTTGTGTACAAAG 334
Query 301 GTGTCATTAGAGAAAAACCAACCAGTAAAGAAGAAGCTCGTGAATTTATCAAAGGCTATT 360
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 335 GTGTTATTAGAGAAAAACCAACCACTAAAGAAGAAGCTCGTGAATTTATCAAAGGCTATT 394
Query 361 CCGGGTCACACGGAGGCGTTGTGGGATCTGTTCTTGTAAGGAACTTGAAAACTGGAGTTA 420
|||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 395 CCGGTTCACACGGAGGAGTTGTGGGATCTGTTCTTGTTAGAAACTTGAAAACTGGAGTTA 454
Query 421 GAAGAGGAGGATGGGACAAAGCAGAGGTTTATTTCCATGAGATACCAGAACAAATCATCG 480
|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 455 AAAAAGGAGGATGGGACAAAGCTGAGGTTTATTTCCATGAGATACCAGAACAAGTCATTG 514
Query 481 ACGATCTTATTGATGATGCAATAACGTATAAGGTTGCTGGAGGTTTAACCCTGGAGCATC 540
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 515 ACGGTCTTATTGATGATGCAATAACTTATAAGGTTGCTGGAGGTTTAACACTGGAGCATC 574
Query 541 CCCTCATTTCACCCTTTATCGATTCTGTGGTGGGAGGAGTTGATACAGTGATGGGACTTC 600
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 575 CCCTCATTTCACCCTTTATCGATTCTGTGGTGGGAGGGGTTGATACAGTCATGGGACTTC 634
Query 601 CTAAAGAACTCACAGAAAAATTCATCAACGATGTGTTATGTAGGAAGAACTCAAGCCCCT 660
||||||||||||||||||||||||| ||||||||||| | | | | | |||||| ||||
Sbjct 635 CTAAAGAACTCACAGAAAAATTCATAAACGATGTGTTGT-T-GTA-G--CTCAAGTCCCT 689
Query 661 TTT-GATTATGTAGGAA 676
||| |||||||||||||
Sbjct 690 TTTTGATTATGTAGGAA 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33204771167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5