BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951588
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66530.1 | Symbols: | Galactose mutarotase-like superfamily... 1592 0.0
> AT5G66530.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr5:26553744-26555691 REVERSE LENGTH=1117
Length=1117
Score = 1592 bits (862), Expect = 0.0
Identities = 928/961 (97%), Gaps = 0/961 (0%)
Strand=Plus/Plus
Query 4 AAGGAGATAAAAGCAAACATGGCGATTGTTTCTGTCTCTCACTCTTTTCTCACCTTCAAT 63
||||||| |||| |||| |||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 99 AAGGAGAGAAAAACAAAAATGGCGATTGTTTCCGTCTCTAACTCTTTTCTCACTTTCAAT 158
Query 64 TCTCCTAACCAGCTCCGACTTAGCCGAAGAAGATTCTCTGCCATGGCTACTTCGACTACT 123
||||| || ||||||||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 159 TCTCCCAATCAGCTCCGATTTAGCCGAAGAAGATTCTCTGCCATGGCTTCTTCAACTACT 218
Query 124 GGAGTGAGAGTCGCTGAAGGAGAAGGCAATTTGCCAAAACTAGTCCTTACTTCTCCTCAG 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 219 GGAGTGAGAGTCGCTGAAGGAGAAGGCAATTTGCCAAAACTTGTCCTTACTTCTCCTCAG 278
Query 184 AACAGCGAGGCTGAGATATATCTCTTTGGAGGCTGCATTACTTCTTGGAAAGTTGCGAAT 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 279 AACAGCGAGGCTGAGATATATCTCTTCGGAGGCTGCATTACTTCTTGGAAAGTTGCGAGC 338
Query 244 GGTAAAGATCTTCTTTTCGTCAGACCAGATGCTGTCTTCAATAAGATTAAGCCCATTAGC 303
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GGTAAAGATCTTCTTTTTGTCAGACCAGATGCTGTCTTCAATAAGATTAAGCCCATTAGC 398
Query 304 GGAGGGATTCCACATTGTTTTCCACAGTTTGGACCTGGACAAATTCAACAGCATGGGTTT 363
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 399 GGAGGGATTCCACATTGTTTTCCACAGTTTGGACCTGGGCTAATTCAACAGCATGGGTTT 458
Query 364 GGAAGGAACATGGACTGGTCTGTTGTCGATTCCCAGAATGCTGATGACAATGCTGCTGTT 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 459 GGAAGGAACATGGACTGGTCTGTTGTCGATTCCCAGAATGCAGATGACAATGCTGCTGTT 518
Query 424 ACTCTTGAGCTTAAGGATGGTCCCTATAGTCGAGCTATGTGGGACTTTGCTTTCCAGGCT 483
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 519 ACTCTTGAGCTTAAGGATGGTCCCTATAGTCGAGCCATGTGGGACTTTGCTTTCCAGGCT 578
Query 484 CTATACAAGGTCATTGTTGGCGCGGACTCCCTTTCCACTGAGCTAAAGATTACAAACACA 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CTATACAAGGTCATTGTTGGCGCGGACTCCCTTTCCACTGAGCTAAAGATTACAAACACA 638
Query 544 GACGATAAACCATTTTCTTTCAGCACTGCGTTGCATACTTACTTCCGTGCTTCTTCCGCG 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 639 GACGATAAACCATTTTCTTTCAGCACTGCGTTGCATACTTACTTCCGTGCTTCTTCTGCG 698
Query 604 GGGGCCTCCGTGAGAGGTCTAAAGGGTTGTAAAACTCTCAATAAGGATCCTGACCCTAAG 663
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 699 GGGGCCTCCGTGAGAGGTCTAAAGGGTTGTAAAACTCTCAATAAGGATCCAGACCCTAAG 758
Query 664 AACCCAATAGAGGGTAAAGAAGAAAGGGATGCAGTCACTTTTCCTGGATTTGTGGATTGC 723
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 759 AACCCAATAGAGGGTAAAGAAGACAGGGATGCAGTCACTTTTCCTGGATTTGTGGATACC 818
Query 724 GTCTATCTGGATGCTCCTAATGAATTGCAGTTTGATAATGGCTTGGGTGATAAAATAATC 783
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GTCTATCTTGATGCTCCCAATGAATTGCAGTTTGATAATGGCTTGGGTGATAAAATAATC 878
Query 784 ATCAAAAACACAAATTGGTCAGATGCGGTCTTGTGGAACCCGCATACTCAGATGGAGGCT 843
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 879 ATCAAAAACACAAATTGGTCGGATGCGGTCTTGTGGAACCCGCATACTCAGATGGAGGCT 938
Query 844 TGTTACAGAGACTTTGTGTGCGTGGAAAATGCAAAGCTTGGGGATGTCAAGCTAGAGCCG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TGTTACAGAGACTTTGTGTGCGTGGAAAATGCAAAGCTTGGGGATGTCAAGCTAGAGCCG 998
Query 904 GGACAGTCTTGGACTGCAACACAGCTTCTCAGTATCAGTTGAAAACAATGTAATTTACAC 963
||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||| ||
Sbjct 999 GGACAGTCTTGGACTGCAACACAACTTCTCAGCATCAGTTGAAAACATTGTACTTTAAAC 1058
Query 964 T 964
|
Sbjct 1059 T 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5