BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951589
Length=1992
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2981 0.0
AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3 |... 137 3e-31
> AT5G66520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=1863
Length=1863
Score = 2981 bits (1614), Expect = 0.0
Identities = 1736/1797 (97%), Gaps = 0/1797 (0%)
Strand=Plus/Plus
Query 174 AGATGCTCAAAACAAGAAGAACTGAAGCAAATCCACGCTCGCATGCTGAAAACTGGCTTG 233
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 AGATGCTCAAAGCAAGAAGAACTGAAGCAAATCCACGCTCGCATGCTGAAAACTGGCTTG 126
Query 234 ATTCAGGATTCTTATGCAATCACAAAGTTTCTTTCTTGCTGCATTTCTTCGACTTCTTCC 293
|| |||||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct 127 ATGCAGGATTCTTATGCAATCACAAAGTTTCTTTCTTTCTGCATTTCTTCAACGTCTTCC 186
Query 294 GACTTTTTGCCTTATGCCCAGATTGTGTTTGACGGGTTTGATCGACCAGGTACTTTCTTG 353
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 187 GACTTTTTGCCTTATGCCCAGATTGTGTTTGACGGGTTTGATCGACCAGATACTTTCTTG 246
Query 354 TGGAACCTAATGATCAGAGGGTTCTCGTGCTCAGACGAACCTGAGAGGTCTCTTCTTCTG 413
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 247 TGGAACCTAATGATCAGAGGGTTCTCGTGCTCAGACGAACCCGAGAGGTCTCTTCTCCTG 306
Query 414 TATCAACGTATGCTCTGTTGTTCAGCTCCTCATAACGCATATACTTTTCCGTCTCTTCTC 473
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 307 TATCAACGTATGCTCTGTTCTTCAGCTCCTCATAACGCGTATACTTTTCCGTCTCTTCTC 366
Query 474 AAAGCTTGTTCGAACCTATCTGCATTTGAAGAAACAACGCAAATTCACGCACAGATCACG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AAAGCTTGTTCGAACCTATCTGCATTTGAAGAAACAACGCAAATTCACGCACAGATCACG 426
Query 534 AAACTTGGATATGAAAATAATGTATACGCAGTGAATTCGCTGATTAATTCATATGCTGCG 593
|||||||||||||||||| |||| || ||||||||||| ||||||||||||||||||| |
Sbjct 427 AAACTTGGATATGAAAATGATGTCTATGCAGTGAATTCTCTGATTAATTCATATGCTGTG 486
Query 594 ACCGGGAACTTCGAGCTAGCTCACCTTCTCTTTGACAGAATGTCCAAACCCGATGCTGTC 653
|||||||| ||| |||||||||||||||||||||||||||| || |||| |||| ||||
Sbjct 487 ACCGGGAATTTCAAGCTAGCTCACCTTCTCTTTGACAGAATCCCCGAACCTGATGATGTC 546
Query 654 TCATGGAACTCTGTGATTAAAGGGTACGCAAAAGCTGGAAAAATGGATATTGCGTTAACG 713
|| |||||||||||||| ||||| || | |||||||||||||||||||||||| ||||||
Sbjct 547 TCGTGGAACTCTGTGATCAAAGGTTATGTAAAAGCTGGAAAAATGGATATTGCATTAACG 606
Query 714 TTATTCAGGAAAATGGCAGAAAAGAATGCTATATCATGGACTACGATGATCTCTGGGTAT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTATTCAGGAAAATGGCAGAAAAGAATGCTATATCATGGACTACGATGATCTCTGGGTAT 666
Query 774 GTTCAAGCAGGCATGAACAAGGAAGCTCTGCAATTATTTCATGAAATGCAGAATTCAGAT 833
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 667 GTTCAAGCAGACATGAACAAGGAAGCTCTGCAATTGTTTCATGAAATGCAGAATTCAGAT 726
Query 834 GTTGAGCCTGATAATGTTTCCCTAGCTAATGCTCTCTCAGCTTGCGCTCAGCTCGGAGCA 893
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 727 GTTGAGCCTGATAATGTTTCCCTAGCTAATGCTCTCTCAGCTTGTGCTCAGCTCGGAGCA 786
Query 894 CTCGAGCAAGGGAAATGGATTCATTCCTATCTTAATAAAACAAGAATCAGAATGGACTCT 953
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 787 CTCGAGCAAGGGAAATGGATCCATTCCTATCTTAATAAGACAAGAATCAGAATGGACTCT 846
Query 954 GTTTTGGGTTGTGTTCTTATAGATATGTATGCAAAGTGCGGTGACATGGAAGAAGCTTTG 1013
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 847 GTTTTGGGTTGTGTTCTTATAGATATGTATGCAAAGTGCGGTGAAATGGAAGAAGCTTTG 906
Query 1014 GAAGTTTTCAAGAATATTAAGAAAAAATCAGTGCAAGCATGGACAGCTTTGATTTCCGGA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 907 GAAGTTTTCAAGAATATTAAGAAAAAATCAGTGCAAGCATGGACAGCTTTGATTTCAGGA 966
Query 1074 TATGCATACCATGGCCATGGAAGAGAAGCAATTAGCAAATTCATGGAGATGCAAAAGATG 1133
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 967 TATGCATACCATGGCCATGGAAGAGAAGCTATTAGCAAATTCATGGAGATGCAAAAGATG 1026
Query 1134 GGAATAAAGCCAAATGTCATAACTTTCACTGCGGTTCTCACGGCTTGCAGCTACACTGGA 1193
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 1027 GGAATTAAGCCAAATGTGATCACTTTCACTGCGGTTCTCACGGCTTGCAGCTACACAGGA 1086
Query 1194 CTAGTTGAAGAAGGAAAGTTGATATTCTACAGTATGGAGAGAGATTACAACCTGAAACCG 1253
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1087 CTAGTTGAAGAAGGAAAGTTGATATTCTACAGCATGGAGAGAGATTACAACCTGAAACCG 1146
Query 1254 ACCATCGAGCATTATGGCTGTGTTGTTGATTTACTCGGTCGAGCTGGATTGCTAGATGAA 1313
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1147 ACCATCGAGCATTATGGCTGTATTGTTGATTTACTCGGTCGAGCTGGATTGCTTGATGAA 1206
Query 1314 GCAAAACGTTTCATTCAGGAGATGCCATTGAAGCCAAATGCTGTGATATGGGGTGCGTTG 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GCAAAACGTTTCATTCAGGAGATGCCATTGAAGCCAAATGCTGTGATATGGGGTGCGTTG 1266
Query 1374 CTCAAAGCCTGTCGGATTCACAAAAACATCGAATTGGGAGAGGAAATTGGAGAAATCTTA 1433
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 CTCAAAGCCTGTCGAATTCACAAAAACATCGAATTGGGAGAGGAAATTGGAGAAATCTTA 1326
Query 1434 ATTGCAATAGATCCATATCATGGTGGGAGATATGTTCATAAGGCAAATATTCATGCTATG 1493
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1327 ATTGCAATAGATCCATATCATGGCGGAAGATATGTTCATAAGGCAAATATTCATGCTATG 1386
Query 1494 GGCAAGAAGTGGGACAAAGCAGCTGAAACAAGAAGATTGATGAAAGAACAAGGAGTAGCA 1553
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GATAAAAAGTGGGACAAAGCAGCTGAAACAAGAAGATTGATGAAAGAACAAGGAGTAGCA 1446
Query 1554 AAAGTTCCAGGATGTAGTACAATTAGCTTGGACGGGACCACACACGAGTTTTTAGCGGGA 1613
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1447 AAAGTTCCAGGATGTAGTACAATTAGCTTGGAAGGGACCACACACGAGTTTTTAGCGGGA 1506
Query 1614 GACCGATCACATCCAGAGATAGAGAAAATTCAATCTAAATGGAGAATCATGAGAAGGAAA 1673
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GACCGATCACACCCAGAGATAGAGAAAATTCAATCTAAATGGAGAATCATGAGAAGGAAA 1566
Query 1674 CTTGAGGAAAACGGGTACGTACCAGAGTTAGAGGATATGCTGCTTGATCTAGTTGATGAT 1733
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1567 CTTGAGGAAAACGGGTACGTACCAGAGTTAGAAGAGATGCTGCTTGATCTAGTTGATGAT 1626
Query 1734 GATGAAAGAGAGGCTATTGTGCATCAGCACAGCGAGAAATTGGCTATTACATACGGGTTA 1793
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1627 GATGAAAGAGAGGCTATTGTGCATCAGCATAGCGAGAAATTGGCTATTACATACGGGTTA 1686
Query 1794 ATCAAGACTAAACCAGGAACCACTATACGTATAATGAAGAATCTCCGAGTATGCAAAGAC 1853
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1687 ATCAAGACTAAACCAGGAACCATTATTCGTATAATGAAGAATCTCCGAGTATGCAAAGAT 1746
Query 1854 TGTCACAAAGTAACGAAACTCATCTCTAAGATATACAAGAGAGATATCGTAATGAGGGAT 1913
||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1747 TGTCACAAAGTAACGAAGCTCATCTCTAAGATATACAAGAGGGATATTGTAATGAGAGAT 1806
Query 1914 AGGACAAGGTTCCATCATTTCAGAGATGGGAAATGCAGTTGTGGGGACTACTGGTAA 1970
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 AGGACAAGGTTCCATCATTTCAGAGATGGGAAATGCAGTTGTGGGGACTACTGGTAA 1863
> AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3
| chr5:26549704-26551604 REVERSE LENGTH=1230
Length=1230
Score = 137 bits (74), Expect = 3e-31
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 1 GATCGATTTACGTTTTGTCAATGAAATCGAAAAGGGGTTTTTCGCCGGAGCCAGAGGAAG 60
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 GATCGATTTGCGTTTTATCAATGAAATCGAAAAGGGGTTTTTCGCCGGAGCCAGAGGAAG 21
Query 61 AGGAGAGAGTGCAGTCTTTG 80
||||||||||||||||||||
Sbjct 20 AGGAGAGAGTGCAGTCTTTG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98694271470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5