BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951596
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1387 0.0
AT5G66455.1 | Symbols: | pseudogene of pentatricopeptide (PPR)... 1221 0.0
> AT3G47840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:17651912-17654032 FORWARD LENGTH=2121
Length=2121
Score = 1387 bits (751), Expect = 0.0
Identities = 991/1106 (90%), Gaps = 20/1106 (2%)
Strand=Plus/Plus
Query 907 TGATTCTTTGTCAGTGAGTAACTCCATGATGAAGATGTATTCAACATGTGGCAAGTTAGA 966
|||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||
Sbjct 1026 TGATTCTTTGTCAGTGAGTAACTCGATGATGAAGATGTATTCTACATGTGGGAATTTAGT 1085
Query 967 CTCTGCTTCTGTTTTGTTTCAAGGAATGAGACGCAGGGACATTATTACGTGGAGCACGAT 1026
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||
Sbjct 1086 CTCTGCTTCTGTTTTGTTTCAAGGAATGAGATGCAGGGACATTATTTCGTGGAGTACCAT 1145
Query 1027 TATTGGAGGGTACTCTC-AGTCAGGATTAGGAGAAGAA-GTTTTCATGTGTTTCTCATGG 1084
|||||||||||||| || || | || || ||||||||| ||||| | || ||||||||||
Sbjct 1146 TATTGGAGGGTACTGTCAAG-CCGGTTTTGGAGAAGAAGGTTTT-AAGTATTTCTCATGG 1203
Query 1085 ATGAGACAAGCAGGGCCAAAACCAACCGATCCTGCTCTAGCTAGTTTGCTGAGTGTTTCA 1144
||||||||| ||||| |||||||||| ||| |||||| |||||||||||||||||||||
Sbjct 1204 ATGAGACAATCAGGGACAAAACCAACAGATTTTGCTCTTGCTAGTTTGCTGAGTGTTTCA 1263
Query 1145 GGAACCATGGCAGTTCTTGAGCAAGGCAGGCAAGTTCATGCGCTTGCTCTTTATCTTGGT 1204
|||| |||||||||| ||||| ||||||||||||||| ||||||||||||| | |||||
Sbjct 1264 GGAAACATGGCAGTTATTGAGGGAGGCAGGCAAGTTCACGCGCTTGCTCTTTGTTTTGGT 1323
Query 1205 TTAGAACAGAACTCTACTATTCGTAGT-GCTCTGATTAATATGTACTCGAAATGTGGAAG 1263
|||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||
Sbjct 1324 TTAGAACAGAACTCCACGGTTCGTAGTAG-TCTGATTAATATGTACTCGAAATGTGGAAG 1382
Query 1264 TATCGAAGAAGCTTCAAAGATATTCGAAGAAACAGATACAGATGATATTGTTTCTTTGAC 1323
|||| |||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 1383 TATCAAAGAAGCTTCAATGATATTCGGAGAAACAGATAGAGATGATATTGTTTCTCTGAC 1442
Query 1324 AGCTATGATCAATGGATATGCAGAACATGGAAATACCAAAGAAGCCATTGATCTGTTTGA 1383
||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 1443 AGCTATGATCAATGGATATGCAGAACATGGAAAGAGCAAAGAAGCTATTGATCTGTTTGA 1502
Query 1384 GAAAAGTCTAAAGGTTGGTCTCAGGCCCGACACTGTAACTTTCATTAGCGTTCTCACCGC 1443
||| ||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||
Sbjct 1503 GAAGAGTCTAAAGGTTGGTTTCAGACCCGACTCTGTAACTTTCATCAGCGTTCTCACCGC 1562
Query 1444 TTGTAGTCATTCGGGACAGCTTGACCTTGGTTTTCGCTATTTCAACTTGATGCAAGACGA 1503
|| | ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||
Sbjct 1563 CTGCACTCATTCGGGACAGCTTGACCTTGGTTTTCACTATTTCAACATGATGCAAGA-GA 1621
Query 1504 -GTATAATATCAGACCAGTCAAGGAACATTATGGATGTATGGTTGATCT-TCTGTGTAGA 1561
||||||||| ||||||| ||||||||||||||| |||||||||||||| | | ||||||
Sbjct 1622 CGTATAATATGAGACCAGCCAAGGAACATTATGGTTGTATGGTTGATCTGT-TATGTAGA 1680
Query 1562 GCAGGACGGCTAAGTGATGCAGAGAAGATGATCAATGAGATGCCATGGAAGAAGGACGAT 1621
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1681 GCAGGACGGCTAAGTGATGCAGAGAAGATGATCAATGAGATGTCATGGAAGAAAGACGAT 1740
Query 1622 GTAGTCTGGACCACACTCCTCAATGCGTGTAAGGCGAAAGGAGACACTGAACGTGGAAGA 1681
||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||| |||
Sbjct 1741 GTAGTCTGGACCACACTTCTCATTGCGTGTAAGGCCAAAGGAGACATTGAACGTGGGAGA 1800
Query 1682 AGGGCGGCTGAGAGGATTCTAGAGCTGGATCCTACTTCCGAAACTGCATTTGTAACACTA 1741
||||| ||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 1801 AGGGCTGCTGAGAGGATTCTAGAGCTGGATCCTACTTGTGCAACTGCACTTGTAACACTA 1860
Query 1742 GCCAATATATATTCAAGCACGGGGAAATTGGAAGAAGCAGCGCATGTAAGGAAAGCG-AT 1800
|||||||||||||||||||| ||||| ||||||||||| || ||||||| |||| ||
Sbjct 1861 GCCAATATATATTCAAGCACAGGGAACTTGGAAGAAGCTGCAAATGTAAG-AAAGAATAT 1919
Query 1801 GAAATCAAAAGGCGTGATCAAAGTGCCTGGATGGTCATCAATTAAGATCATGGATCGGGC 1860
|||| |||||||||||||||||| ||| |||||||||||||||||||||| |||| | |
Sbjct 1920 GAAAGCAAAAGGCGTGATCAAAGAGCCCGGATGGTCATCAATTAAGATCAAGGATTGCGT 1979
Query 1861 CTCAACGTTTGTATCTGGC-AGTCGGTCCCATTCACAAAGTGAAGATATATACAGTATAT 1919
||| ||||||||||||| | ||||| |||| | ||||||||||||||||||| ||| |
Sbjct 1980 TTCAGCGTTTGTATCTGGTGA-TCGGTTCCATCCGCAAAGTGAAGATATATACAATATCT 2038
Query 1920 TGGACTTAGTAGTATCTGGTGCAGAAGTTCATAGATTTGATTGTCGA-AT-AAATG-GAG 1976
|||| |||| ||||||||||||||||| ||||||||||||||| | | || ||| | |||
Sbjct 2039 TGGAATTAGCAGTATCTGGTGCAGAAGCTCATAGATTTGATTG-C-ACATTAAA-GAGAG 2095
Query 1977 CTTTTGGCTTTTATTCATATTCATGA 2002
||||||| || ||| |||||| |||
Sbjct 2096 CTTTTGGGGTTAATTTATATTCCTGA 2121
> AT5G66455.1 | Symbols: | pseudogene of pentatricopeptide (PPR)
repeat-containing protein | chr5:26535980-26538011 REVERSE
LENGTH=1449
Length=1449
Score = 1221 bits (661), Expect = 0.0
Identities = 873/969 (90%), Gaps = 39/969 (4%)
Strand=Plus/Plus
Query 1005 ACATTATTACGTGGAGCACGATTATTGGAGGGTACTCTCA-G---T----CAGGATTAGG 1056
|||||||| ||||||||||||||| | ||||||||||||| | | |||| |||||
Sbjct 384 ACATTATTTCGTGGAGCACGATTACTCGAGGGTACTCTCAGGCACTCAGCCAGGTTTAGG 443
Query 1057 AGAAGAAGTTTTCATGTGTTTCTCATGGATGAGACAAGCAGGGCCAAAACCAACCGATCC 1116
|||||||||||| | || ||||||||||||||||||||||||| ||||||||| ||||
Sbjct 444 AGAAGAAGTTTTTACGTATTTCTCATGGATGAGACAAGCAGGGTCAAAACCAA---ATCC 500
Query 1117 TGCTC-TAGCTAGTTTGCTGAGTGTTTCAGGAACCATGGCAGTTCTTGAGCAAGGCAGGC 1175
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TGCTCTTA-CTAGTTTGCTGAGTGTTTCAGGAACCATGGCAGTTCTTGAGCAAGGCAGGC 559
Query 1176 AAGTTCATGCGCTTGCTCTTTATCTTGGTTTAGAACAGAACTCTACTATTCGTAGTGCTC 1235
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 560 AAGTTCATGCGCTTGCTCTTTATCTTAGTTTAGAACAGAACTCTACTATTCGTAGTGCTC 619
Query 1236 TGATTAATATGTACTCGAAATGTGGAAGTATCGAAGAAGCTTCAAAGATATTCGAAGAAA 1295
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 620 TGATTAATATGTACTCAAAATGTGGAAGTATCGAAGAAGCTTCAAAG-TATTCGCAGAAA 678
Query 1296 CAGATACAGATGATATTGTTTCTTTGACAGCTATGATCAATGGATATGCAGAACATGGAA 1355
||| | ||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 679 TAGACAGAGATGATATTGTTTC--T------T-TGATCAATGGATATGCAGAACATGGAA 729
Query 1356 ATACC-AAAGAAGCCATTGATCTGTTTGAGAAAAGTCTAAAGGTTGGTCTCAGGCCCGAC 1414
| ||| ||| |||| || |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 730 AGACCTAAA-AAGCTATAGATCTGTTTGAGAAGAGTCTGAAGGTTGGTCTCAGACCCGAC 788
Query 1415 ACTGTAACTTTCATTAGCGTTCTCAC-CGCTTGTAGTCATTCGGGACAGCTTGACCTTGG 1473
||||||||||||| ||| ||||| | | ||| || |||||| ||||| | |||||||||
Sbjct 789 TCTGTAACTTTCATCAGCATTCTCTCGCCCTT-TACTCATTCAGGACATCATGACCTTGG 847
Query 1474 TTTTCGCTATTTCAACTTGATGCAAGACG-AGTATAATATCAGACCAGTCAAGGAACATT 1532
||||| |||| |||||||||||||||| | |||||| |||||||||| ||||||||| |
Sbjct 848 TTTTCACTATCTCAACTTGATGCAAGA-GAAGTATATTATCAGACCAACCAAGGAACACT 906
Query 1533 ATGGATGTATGGTTGATCTTCTGTGTAGAGCAGGACGGCTAAGTGATGCAGAGAAGATGA 1592
||||||||||||||||||| |||||||||||||| |||| ||||| ||||||| ||||||
Sbjct 907 ATGGATGTATGGTTGATCTGCTGTGTAGAGCAGGCCGGCCAAGTGTTGCAGAGCAGATGA 966
Query 1593 TCAATGAGATGCCATGGAAGAAGGACGATGTAGTCTGGACCACACTCCTCAATGCGTGTA 1652
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 967 TCAATGAGATGCCATGGAAGAAGGACGATGTAGTCTGGACCACACTTCTCAATGCGTGTA 1026
Query 1653 AGGCGAAAGGAGACACTGAACGTGGAAGAAGGGCGGCTGAGAGGATTCTAGAGCTGGATC 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AGGCGAAAGGAGACACTGAACGTGGAAGAAGGGCGGCTGAGAGGATTCTAGAGCTGGATC 1086
Query 1713 CTACTTCCGAAACTGCATTTGTAACACTAGCCAATATATATTCAAGCACGGGGAAATTGG 1772
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1087 CTACTTCTGAAACTGCATTTGTAACACTAGCCAATATATATTCAAGCACAGGGAAATTGG 1146
Query 1773 AAGAAGCAGCGCATGTAAGGAAAGCGATGAAATCAAAAGGCGTGATCAAAGTGCCTGGAT 1832
||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1147 AAGAAGCTGCGCATGTAAGGAAAGTAATGAAATCAAACGGCGTGATCAAAGTGCCTGGAT 1206
Query 1833 GGTCATCAATTAAGATCATGGATCGGGCCTCAACGTTTGTATCTGGCAGTCGGTCCCATT 1892
||||||||| ||||||||||||| ||| ||||||| | | ||| |||| ||||
Sbjct 1207 GGTCATCAACTAAGATCATGGATAGGGATTCAACGT--G---C----AGTTGGTCTCATT 1257
Query 1893 CACAAAGTGAAGATATATACAGTATATTGGACTTAGTAGTATCTGGTGCAGAAGTTCATA 1952
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||
Sbjct 1258 CACAAAGTGAAGATATATACAGTATATTGGAATTAGTAGTATCCGGTGCAGAAGCTCATA 1317
Query 1953 GATTTGATT 1961
|| |||||
Sbjct 1318 -ATATGATT 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100200287820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5