BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951605
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66360.2 | Symbols: | Ribosomal RNA adenine dimethylase fam... 1672 0.0
> AT5G66360.2 | Symbols: | Ribosomal RNA adenine dimethylase family
protein | chr5:26510229-26511802 FORWARD LENGTH=1334
Length=1334
Score = 1672 bits (905), Expect = 0.0
Identities = 1103/1194 (92%), Gaps = 31/1194 (3%)
Strand=Plus/Plus
Query 1 TTCGTGACTGAAGCAAAGTGATGATTCTTCGATTG-AAGAACCAAACGCCCGGCAAAATC 59
||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||
Sbjct 81 TTCGTGACTGAAGCAAAGTGATGATTCTTCGATTGAAAG-ACCAAACGCTCATCAAAATC 139
Query 60 AATTTAACTCGCTCATACTTATCTTCCTTAGTTTTCCGACGAGA-T-T--CT--CA--CT 111
|||| |||||| || ||||||||||||||||||||||||||||| | | || || ||
Sbjct 140 AATTCAACTCGTTCGTACTTATCTTCCTTAGTTTTCCGACGAGATTCTCACTCGCAGGCT 199
Query 112 C-G-C---A--CGAT------CGCCGGAGAAGAGGGTACGAGAGGGATGTGGGAATCGAG 158
| | | | |||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 200 CGGACAAAACCCGATCACGACCGCCGGAGAAGAGGATACGAGAGGGATGTGAGAATCGAG 259
Query 159 GAGAAGAAGGAACACGATGGGTTGTTTCTGTGCAAGAGCAAAGGCCAACACCTTCTTACC 218
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 260 GAGAAGAAGGAACACGATGGATTGTTTCTGTGCAAGAGCAAAGGCCAACACCTTCTTACC 319
Query 219 AACACCAGAATCCTCGACGCCATTGTCCGAAGCTCCGATGTCAGGCCGACCGATACAGTC 278
||||| |||||||||||| ||||||| |||||||||||| |||||||||| |||||||||
Sbjct 320 AACACTAGAATCCTCGACTCCATTGTTCGAAGCTCCGATATCAGGCCGACTGATACAGTC 379
Query 279 TTGGAGATCGGACCTGGTACTGGAAATCTCACGATGAAGCTTCTTGAAGCTGCCCAGGAT 338
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 380 TTGGAGATCGGACCTGGCACTGGAAATCTCACGATGAAACTTCTTGAAGCTGCTCAGAAT 439
Query 339 GTCGTAGCCGTTGAGTTAGATAAGCGTATGGTGGAGATTCTACGCAAAAGGGTTTCTGAC 398
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GTCGTAGCCGTCGAGCTAGATAAGCGTATGGTGGAGATTCTACGCAAAAGGGTTTCTGAC 499
Query 399 CATGGTTTTGCTCATAAACTTACGATTATTCAAAAAGATGTTCTGAAGACAGATTTCCCT 458
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 500 CATGGTTTTGCAGATAAACTTACGATTATTCAAAAAGATGTTCTGAAGACAGATTTTCCT 559
Query 459 CAGTTTGATCTCGTGGTTGCTAATATTCCTTACAACATATCTTCCCCTCTTGTGGCGAAG 518
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 560 CACTTTGATCTCGTGGTTGCAAATATTCCTTACAACATATCTTCCCCTCTTGTGGCCAAG 619
Query 519 CTTGTATACGGCTCCAACACCTTTCGAAGCGCCACTCTGTTGCTTCAAAAGGAATTCTCC 578
||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||
Sbjct 620 CTTGTATACGGCTCCAATACTTTTCGAAGCGCCACACTCTTGCTTCAAAAGGAATTCTCC 679
Query 579 CGCCGGCTCCTGGCGAATCCAGGAGATTCCGATTTCAATAGATTGGCGGTGAACGTTAAG 638
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CGCCGGCTCCTGGCAAATCCAGGAGATTCCGATTTCAATAGATTGGCGGTGAACGTTAAG 739
Query 639 TTAGTAGCTGATGTTAAATTTGTGATGGATGTGAGTAAAAGAGAGTTTGTTCCACCTCCT 698
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 740 TTAGTAGCTGATGTTAAATTTGTGATGGATGTAAGTAAAAGAGAGTTTGTTCCACCTCCT 799
Query 699 AAAGTCGATTCATCTGTAGTTATGATTACACCAAAGGAGATAATACCAGATGTTAATGTT 758
||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 800 AAAGTTGATTCATCTGTAATTAGGATTACACCAAAGGAGATAATACCGGATGTTAATGTT 859
Query 759 CAAGAATGGCTGGCATTCACTCGCTCGTGTTTCGGGAAGAAGAACAAGACGCTTGGTTCC 818
||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 860 CAAGAATGGTTGGCATTCACTCGCACGTGTTTCGGGAAGAAGAATAAGACGCTTGGTTCC 919
Query 819 ATGTTTAGGCAGAAGAAGAAGGTCATGGAGTTGCTA-AGTTTGTCTGCAGAGAGGAATGG 877
||||||||||||||||| ||||||||||| |||| | ||||||||||||| |||| ||||
Sbjct 920 ATGTTTAGGCAGAAGAAAAAGGTCATGGAATTGC-AGAGTTTGTCTGCAGGGAGGCATGG 978
Query 878 TTCGAAAGTTGGGGTTATGAATCAGACATGTGGTGATTCTGACAGTGATGTTGAAGAAGA 937
||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 979 CTCGAATGTTGAGGTTATGAATCAGACAGGTGGTGATTCTGACAGTGATGTTGAAGAAGA 1038
Query 938 TGGAGATGGGAAAGATGATTTGTTGTGTTTGGATACAGATGCAAGTATGTTCAAGGAAAG 997
||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TGG-GA----AA-GATGATTTGTTGTGTTTGGATACAGATGCAAGTATGTTCAAGGAAAG 1092
Query 998 GGTTATTGGAATACTGAGAACAAATGGGTTCGAAGAGAAGAGACCATCCAAGCTCTCTCA 1057
||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1093 GGTAATTGAAATTCTGAGAACAAATGGGTTCGAAGAGAAGAGACCATCCAAGCTTTCACA 1152
Query 1058 TAGTGAGTTGTTACATTTGCTTTCTCTGTTTAACCGTGCTGGAGtttttttCCATGATAT 1117
| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 1153 TCGTGAGTTGTTACATTTGCTTTCTTTGTTTAACCAAGCTGGAATTTTTTTCCATGATAT 1212
Query 1118 TACATCATTACCAATGGATCTACACGAATCATGATAAGTTTTCTTTAATGATTT 1171
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1213 TACATCATTACAAATGGATCTACACGAATAATGATAAGTTTTCTTTAATGTTTT 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5