BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951606
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66350.1 | Symbols: SHI | Lateral root primordium (LRP) prot... 1502 0.0
> AT5G66350.1 | Symbols: SHI | Lateral root primordium (LRP) protein-related
| chr5:26504467-26506569 REVERSE LENGTH=1669
Length=1669
Score = 1502 bits (813), Expect = 0.0
Identities = 972/1046 (93%), Gaps = 21/1046 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGGTGGTATCGGAAAATGGCAGGATTTTTCTCGCTAGGACAAGGCGGAGGAGGAA 60
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 407 ATGGCTGGTGGTATCGGAAAATGGCAGGATTTTTCTCGTTAGGACACGGCGGAGGAGGAA 466
Query 61 ACAGCCAAGACGAGCACAACCACCACAGAACCAACACTACTAATCCTTCTTCCTCGGGAA 120
||| | | || || | |||||||||| ||||||| |||||||||||| |||||||
Sbjct 467 ACA--C---TCCAG-AC-A--ACCACAGAACAAACACTAATAATCCTTCTTCATCGGGAA 517
Query 121 CAGAATCTTGGCTTTGGTGCAGAAACCCTAACTCTAACGCTGACGGTGGAGAAGTTGCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 518 CAGAATCTTGGCTTTGGTGCAGAAACCCTAACTCTAACGCTGACGGTGGAGAAGCTGGTC 577
Query 181 CTTCTTACAAAGGAACCCTTGAGCTATGGCAACATCCAAACAATCAAGAAATCATTTTCC 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 578 CTTCTTACAAAGGAACCCTTGAGCTATGGCAACACCCAAACAATCAAGAAATCATTTTCC 637
Query 241 AGCAGCAGCAGC-A-AG----AAAGGCTCGATCTTTACACTTCCGCTGCGGGTTTAGGTG 294
|||||||||||| | || ||||||| |||||||||||||||||||||||||||||||
Sbjct 638 AGCAGCAGCAGCAACAGCAACAAAGGCTGGATCTTTACACTTCCGCTGCGGGTTTAGGTG 697
Query 295 TTGGACCGAGCAACCGGAGCTTAATTGAAACTTCCGGCGGTGCGTTGATGATGATGAGGA 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 698 TTGGACCGAGCAACCGGAGCTTAATTGAAACTTCCGGCGGTGCGTTGATGATGATGAGAA 757
Query 355 GCAGTAGTGGCGGCGGCGGGCCAAGCTGCCAGGATTGTGGGAATCAATCGAAGAAAGACT 414
|| |||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 758 GCGGTAGCGGTAGCGGCGGACCAAGCTGCCAGGATTGTGGGAATCAATCTAAGAAAGACT 817
Query 415 GCGCTCACATGAGATGCAGGACTTGCTGCAAGAGCCGAGGCCTTGAGTGTCCCACTCACG 474
|| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 818 GCTCTCACATGAGATGTAGGACTTGCTGCAAGAGCCGTGGCCTTGACTGTCCCACTCACG 877
Query 475 TGAAGAGCACGTGGGTCCCTGCCGCTAAACGCCGAGAACGCCAGCAGCAGCTTGCTTCCG 534
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 878 TGAAGAGCACGTGGGTTCCTGCCGCTAAACGCCGAGAACGCCAGCAGCAGCTTTCTACCG 937
Query 535 GTCAACAACCGCAGTCGCAGCCGCAGGGTGAGAGCGTCCCTAAACGGCAGAGAGAGCATA 594
|||| |||||||| ||| | ||| | ||||||||||||||| |||||||||| ||
Sbjct 938 GTCAGCAACCGCA---GCA---ACTGGGAGGGAGCGTCCCTAAACGACAGAGAGAGCGTA 991
Query 595 TCCAGGCGAGATCGACTTCCCTGGTCTGCACTCGTATACCGTCTAACAACACTTCAGGGT 654
||| |||||||||||||||| ||| || |||||||||||| |||||||||||||||||||
Sbjct 992 TCCCGGCGAGATCGACTTCCATGGCCTACACTCGTATACCTTCTAACAACACTTCAGGGT 1051
Query 655 TAGAGGTTGGGAACTTTCCGCCGGAAGTTCGGTCGCCGGCGGTTTTCCGGTGCGTGCGTG 714
| ||||||||||| ||||||||||||||| | ||| |||| ||||| |||||||||||||
Sbjct 1052 TGGAGGTTGGGAATTTTCCGCCGGAAGTTAGCTCGTCGGCAGTTTTTCGGTGCGTGCGTG 1111
Query 715 TGAGTTCCGTAGATGATGAAGAAGAAGAGTATGCATACAAAACAGCTGTGAGTATAGGTG 774
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1112 TGAGTTCCGTAGATGATGAAGAAGAAGAGTATGCATATAAAACAGCTGTGAGTATAGGCG 1171
Query 775 GTCACGTCTTCAAAGGTATTCTCTACGATCAAGGCCCGGCCGAGAGAAGCTCCTCAGGCG 834
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1172 GTCACGTCTTCAAAGGTGTTCTCTACGATCAAGGCCCGGCCGAGAGAAGCTCCTCGGGCG 1231
Query 835 GTGGATCTCAGCCGTTGAATCTCATAACCGCAGGCCCATCGGCCTCATCATCAAGCCCAA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 GTGGATCTCAGCCGTTGAATCTCATAACCGCAGGCCCATCGGCCTCATCATCAAGCCCAA 1291
Query 895 ACGTGAGCTGCAACAATGGAGTCGTTGGCTCCACTTCAGATCATTATATCGATCCTGCCT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 ACGTGAGCTGCAACAATGGAGTCGTTGGCTCCACTTCAGATCATTATATCGATCCTGCCT 1351
Query 955 CACTTAGTTATCCTACTCCCATCAACACTTTCATGACTGGTACGCATTTCTTCTCCAACT 1014
|||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1352 CACTTAATTATCCTACTCCCATTAACACTTTCATGACTGGTACGCACTTCTTCTCCAACT 1411
Query 1015 CAAGATCTTGAATTCTACACTGAGAG 1040
||||||||||||||| |||| |||||
Sbjct 1412 CAAGATCTTGAATTCCACACAGAGAG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51238829940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5