BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951622

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01883.1 | Symbols:  | Polyketide cyclase / dehydrase and li...   169    1e-41
  AT4G19400.1 | Symbols:  | Profilin family protein | chr4:105808...   104    4e-22


> AT4G01883.1 | Symbols:  | Polyketide cyclase / dehydrase and 
lipid transport protein | chr4:813068-815170 FORWARD LENGTH=1139
Length=1139

 Score =  169 bits (91),  Expect = 1e-41
 Identities = 97/100 (97%), Gaps = 0/100 (0%)
 Strand=Plus/Plus

Query  14   AGTAAAGATGAAGGTAGAAGTGCATGTATCAGTAGCTTATGGACTCTACTCGGAACGAGA  73
            ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct  340  AGTAAAGATGAAGGTAGAAGTGCCTGTATCAGTTGCTTATGGACTCTACTCGGAACGAGA  399

Query  74   ATCAATTCCTAAATGGATGACATTCATTTCATCCGTTAAG  113
            |||||||||||||||||||||||| |||||||||||||||
Sbjct  400  ATCAATTCCTAAATGGATGACATTTATTTCATCCGTTAAG  439


> AT4G19400.1 | Symbols:  | Profilin family protein | chr4:10580827-10581989 
REVERSE LENGTH=737
Length=737

 Score =  104 bits (56),  Expect = 4e-22
 Identities = 71/78 (91%), Gaps = 2/78 (3%)
 Strand=Plus/Plus

Query  137  ATATGATGGATCAATTGGTTCAGCTTCTCAAGCTGTGGCTGCAGTTGATCAGTTTGCATT  196
            |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| 
Sbjct  443  ATATGATGGATCAATTGGTTCAGCTTCTCAAGCTATGGCTGCAGCTGATCAGTTTGCATC  502

Query  197  GCAGTTTG-GTCAGAAAA  213
            |||| | | ||| |||||
Sbjct  503  GCAGCT-GAGTCGGAAAA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12566937250


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5