BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951624
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66200.1 | Symbols: ARO2 | armadillo repeat only 2 | chr5:26... 3131 0.0
> AT5G66200.1 | Symbols: ARO2 | armadillo repeat only 2 | chr5:26453460-26455822
REVERSE LENGTH=2363
Length=2363
Score = 3131 bits (1695), Expect = 0.0
Identities = 1901/2001 (95%), Gaps = 12/2001 (1%)
Strand=Plus/Plus
Query 1 CCA-TTGATCTGATCTCGACGATGGCGGACATCGTCAAGCAAATCCTAGCGAAGCCCATT 59
||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 199 CCATTTGATCTGATATCGACGATGGCAGACATCGTCAAGCAAATCCTAGCGAAGCCGATT 258
Query 60 CAACTGTCTGACCAGGTGGTCAAAGCCGCCGATGAGGCTAGTTCCTTCAAGCAGGAGTGC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 259 CAACTGTCTGACCAGGTGGTCAAAGCCGCCGATGAGGCTAGTTCCTTCAAGCAAGAGTGC 318
Query 120 GGCGAACTCAAGGCTAAGACCGAGAAGCTCGCCGGTCTTCTCCGTCAGGCTGCCCGTGCC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 319 GGCGAACTCAAGGCTAAGACCGAGAAGCTCGCCGGTCTTCTCCGTCAGGCTGCCCGCGCC 378
Query 180 AGCAACGACCTCTACGAGCGACCCACTCGCCGTATCATTGATGACACGGAGCAGATGCTT 239
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 379 AGCAACGACCTTTACGAGCGACCCACTCGCCGTATCATCGACGACACGGAGCAGATGCTT 438
Query 240 GAGAAGGCTCTCTCTCTCGTCCTT-AAGTGCCGAGCCAATGGCCTCATGAAGCGCGTCTT 298
|||||||||||||| || || ||| ||||||||||||||||||||||||||||| || ||
Sbjct 439 GAGAAGGCTCTCTCCCTTGT-CTTAAAGTGCCGAGCCAATGGCCTCATGAAGCGAGTTTT 497
Query 299 CACCATCATCCCCGCCGCCGCGTTCCGCAAGATGTCTGCTCAGTTGGAGAACTCTATCGG 358
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 498 CACCATCATCCCCGCCGCCGCGTTCCGGAAGATGTCTGGTCAGTTGGAGAACTCTATCGG 557
Query 359 AGACGTTTCCTGGCTCCTCCGTGTCTCCGCTCCGGCGGAAGACCGTGGTGACGCTGGCTA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AGACGTTTCCTGGCTCCTCCGTGTCTCCGCTCCGGCGGAAGACCGTGGTGACGCTGGCTA 617
Query 419 CCTTGGTCTTCCACCAATCGCCGCCAACGAACCCATCCTTTGCCTGATCTGGGAGCAGAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CCTTGGTCTTCCACCAATCGCCGCCAACGAACCCATCCTTTGCCTGATCTGGGAGCAGAT 677
Query 479 TGCCATTCTCTACACCGGATCGCTTGAAGACCGCTCCGATGCCGCCGCCTCGCTGGTATC 538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 678 TGCCATTCTCTACACCGGATCGCTTGAAGACCGCTCTGATGCCGCCGCCTCGCTGGTATC 737
Query 539 GCTGGCCCGTGACAACGATCGCTACACTAAGCTTATCATAGAGGAAGGAGGTGTGGTGCC 598
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 738 TCTGGCCCGTGACAACGATCGCTACACGAAGCTTATCATAGAGGAAGGAGGTGTGGTGCC 797
Query 599 TCTCCTTAAACTGCTCAAGGAAGGGAAGCCCGAGGGGCAAGAGAACGCCGCGCGTGCGTT 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 798 TCTCCTTAAACTGCTCAAGGAAGGGAAGCCCGAGGGGCAAGAGAACGCAGCGCGTGCGTT 857
Query 659 AGGGTTACTGGGCCGTGATCCGGAGAGCGTGGAGCACATGATTCACGGCGGCGCTTGTTC 718
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 858 AGGGTTACTGGGACGTGATCCTGAGAGCGTGGAGCACATGATTCACGGCGGCGCTTGTTC 917
Query 719 CGTCTTCGGCAAAGTCCTCAAAGAAGGGCCGATGAAAGTCCAGGCGGTTGTTGCGTGGGC 778
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 918 CGTCTTCGGCAAAGTCCTCAAAGAAGGGCCTATGAAAGTCCAGGCGGTGGTTGCGTGGGC 977
Query 779 TACGTCGGAGCTTGTGTCCAATCACCCCAAGTGCCAAGACGTCTTCGCTCAGCACAATGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 978 TACGTCGGAGCTTGTGTCCAATCACCCCAAGTGCCAAGACGTCTTCGCTCAGCACAACGC 1037
Query 839 CATTCGGCTACTCGTTGGCCACTTGGCCTTCGAAACGGTGCAAGAGCACAGCAAATACGC 898
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1038 CATTCGGCTACTCGTTGGCCACTTGGCCTTCGAAACCGTGCAAGAGCACAGCAAATACGC 1097
Query 899 CATTGCCACCACCAACAAAGCTACTTCCATTCACCACGCCGTCGCTCTCGCCAAGGAAAA 958
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CATTGCCACCAACAACAAAGCTACTTCCATTCACCACGCCGTCGCTCTCGCCAAGGAAAA 1157
Query 959 TCCTAATTCCACCTCCTCCGCCGCCGCCTTGCCCAAGGGCCTTGACGAGGATCAGAGCTC 1018
|||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 1158 TCCTAATTCCACCTCC---GCCACCGCCTTGCCCAAGGGTCTTGATGAGGATCAGAGCTC 1214
Query 1019 GATTCCTCATCCTACAGGGAGGCAAATGCCGAATCAGATGCACAATGTGGTCGTCAATAC 1078
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 1215 TATTCCTCATCCTACAGGGAAGCAAATGCCCAATCAGATGCACAATGTGGTCGTCAACAC 1274
Query 1079 CATGGCTGTTAGGGCAAACCCTCCGAGGAAGTCGACTAGCAACGGTGTGAGCCAGAGTAA 1138
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 CATGGCGGTTAGGGCAAACCCTCCGAGGAAGTCGACTAGCAACGGTGTGAGCCAGAGTAA 1334
Query 1139 TGGCGTAAAGCTACCTAGCAATCTACAGCAGCACCAGAATTCAACGTCGAGCGCATCCAA 1198
||| || |||| |||||||| | ||||||||||||||||||| || ||||||||||||||
Sbjct 1335 TGGTGTGAAGCAACCTAGCAGTGTACAGCAGCACCAGAATTCGACTTCGAGCGCATCCAA 1394
Query 1199 GACTCGAGAGCTGGAAGACGCAGCCACCAAGTGTCAGATTAAGGCAATGGCTGCCAGAGC 1258
||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||
Sbjct 1395 GACTCGAGAGCTGGAAGACTCAGCCACCAAGTGTCAGATTAAGGCGATGGCCGCGAGAGC 1454
Query 1259 GCTGTGGAAGCTGGCGAAAGGCAATTCCACCATCTGCAAAAGCATCACAGAGTCCAGAGC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 GCTGTGGAAGCTGGCGAAAGGCAATTCCACCATCTGCAAAAGCATCACAGAGTCCAGAGC 1514
Query 1319 TCTCCTCTGCTTCGCTGTTCTGATTGACAAGGGCAACGAGGAGGTTC-GATACAACTCAG 1377
||| ||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||
Sbjct 1515 TCTTCTCTGCTTCGCTGTTCTGATTGAGAAGGGCGACGAGGAGGT-CAGATACAACTCAG 1573
Query 1378 CTATGGCGTTAATGGAGATTACGGGCGTTGCAGAGCAGGACGCTGATCTGAGGCGCTCCG 1437
|||||||||| |||||||| || | ||||||||||||||||||||| ||||| || ||||
Sbjct 1574 CTATGGCGTTGATGGAGATCACCGCCGTTGCAGAGCAGGACGCTGACCTGAGACGTTCCG 1633
Query 1438 CATTCAAGCCCAACTCCCCGGCCTGCAAGGCTGTGGTGGATCAAGTGCTTAAAATCATCG 1497
| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 1634 CGTTCAAGCCCAATTCCCCGGCCTGCAAGGCTGTGGTTGATCAAGTGCTTAGAATCATTG 1693
Query 1498 AGATTGCGGATTCTGAGCTACTCATCCCCTGCATCAGAACCATAGGGAACCTTGCTAGAA 1557
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1694 AGATAGCGGATTCTGAGCTACTCATCCCCTGCATCAGAACCATTGGGAACCTTGCTAGAA 1753
Query 1558 CTTTCAGAGCAACCGAGACACGGATGATTGGGCCTCTGGTGAAGCTTCTGGACGAAAGAG 1617
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1754 CGTTCAGAGCAACCGAGACACGGATGATCGGGCCTCTGGTGAAGCTTCTGGACGAACGAG 1813
Query 1618 AGCCCGAAGTGACAGTGGAAGCCGCAGTTGCCCTCACGAAGTTTGCCTGCACGGATAATT 1677
||||||||||||||| |||||| || | ||||||||||||||| |||||||||| ||||
Sbjct 1814 AGCCCGAAGTGACAGGGGAAGCTGCGGCTGCCCTCACGAAGTTCGCCTGCACGGCGAATT 1873
Query 1678 ACTTGCACAAAGATCACTCGAGGGGCATTATAGAAGCTGGAGGGGGCAAACATTTGGTAC 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1874 ACTTGCACAAAGATCACTCGAGGGGCATTATAGAAGCTGGAGGGGGCAAACATCTGGTTC 1933
Query 1738 AGTTGGCCTACTTTGGAGAGAGTGGCGTTCAGATTCCGGCATTAGAGCTCCTCTGCTACA 1797
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 1934 AGTTGGCCTACTTTGGAGAGGGTGGCGTACAGATTCCGGCATTAGAGCTCCTCTGTTACA 1993
Query 1798 TAGCACTCAATGTTCCGGACAGCGAACAGCTGGCGAAGGACGAGGTTCTGGCAGTGTTGG 1857
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1994 TAGCACTCAATGTCCCAGACAGCGAACAGCTGGCCAAGGACGAGGTTCTGGCAGTGTTGG 2053
Query 1858 AGTGGGCTTCGAAGCAGTCATGGGTGACCCAGCTGGAGAGATTAGAAGCACTGTTGCAGG 1917
| ||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||
Sbjct 2054 AATGGGCTTCGAAGCAGTCATGGGTAACGCAGCTGGAGAGCTTAGAAGCTTTGTTGCAGG 2113
Query 1918 AGGCAAAGAGCAG-ACTGGACCTTTACCAGTCAA-GAGGATCCAGGGGTTTCAATTTCAA 1975
|||||||||| || |||||||||||||||| ||| ||||||| ||||||| |||||||||
Sbjct 2114 AGGCAAAGAG-AGGACTGGACCTTTACCAG-CAAAGAGGATCAAGGGGTTACAATTTCAA 2171
Query 1976 TTGATTCATTGTTTCGATTTT 1996
|||||||||| ||||||||||
Sbjct 2172 TTGATTCATTATTTCGATTTT 2192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99045675285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5