BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951624 Length=1999 Score E Sequences producing significant alignments: (Bits) Value AT5G66200.1 | Symbols: ARO2 | armadillo repeat only 2 | chr5:26... 3131 0.0 > AT5G66200.1 | Symbols: ARO2 | armadillo repeat only 2 | chr5:26453460-26455822 REVERSE LENGTH=2363 Length=2363 Score = 3131 bits (1695), Expect = 0.0 Identities = 1901/2001 (95%), Gaps = 12/2001 (1%) Strand=Plus/Plus Query 1 CCA-TTGATCTGATCTCGACGATGGCGGACATCGTCAAGCAAATCCTAGCGAAGCCCATT 59 ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 199 CCATTTGATCTGATATCGACGATGGCAGACATCGTCAAGCAAATCCTAGCGAAGCCGATT 258 Query 60 CAACTGTCTGACCAGGTGGTCAAAGCCGCCGATGAGGCTAGTTCCTTCAAGCAGGAGTGC 119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 259 CAACTGTCTGACCAGGTGGTCAAAGCCGCCGATGAGGCTAGTTCCTTCAAGCAAGAGTGC 318 Query 120 GGCGAACTCAAGGCTAAGACCGAGAAGCTCGCCGGTCTTCTCCGTCAGGCTGCCCGTGCC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 319 GGCGAACTCAAGGCTAAGACCGAGAAGCTCGCCGGTCTTCTCCGTCAGGCTGCCCGCGCC 378 Query 180 AGCAACGACCTCTACGAGCGACCCACTCGCCGTATCATTGATGACACGGAGCAGATGCTT 239 ||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 379 AGCAACGACCTTTACGAGCGACCCACTCGCCGTATCATCGACGACACGGAGCAGATGCTT 438 Query 240 GAGAAGGCTCTCTCTCTCGTCCTT-AAGTGCCGAGCCAATGGCCTCATGAAGCGCGTCTT 298 |||||||||||||| || || ||| ||||||||||||||||||||||||||||| || || Sbjct 439 GAGAAGGCTCTCTCCCTTGT-CTTAAAGTGCCGAGCCAATGGCCTCATGAAGCGAGTTTT 497 Query 299 CACCATCATCCCCGCCGCCGCGTTCCGCAAGATGTCTGCTCAGTTGGAGAACTCTATCGG 358 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 498 CACCATCATCCCCGCCGCCGCGTTCCGGAAGATGTCTGGTCAGTTGGAGAACTCTATCGG 557 Query 359 AGACGTTTCCTGGCTCCTCCGTGTCTCCGCTCCGGCGGAAGACCGTGGTGACGCTGGCTA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 558 AGACGTTTCCTGGCTCCTCCGTGTCTCCGCTCCGGCGGAAGACCGTGGTGACGCTGGCTA 617 Query 419 CCTTGGTCTTCCACCAATCGCCGCCAACGAACCCATCCTTTGCCTGATCTGGGAGCAGAT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 CCTTGGTCTTCCACCAATCGCCGCCAACGAACCCATCCTTTGCCTGATCTGGGAGCAGAT 677 Query 479 TGCCATTCTCTACACCGGATCGCTTGAAGACCGCTCCGATGCCGCCGCCTCGCTGGTATC 538 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 678 TGCCATTCTCTACACCGGATCGCTTGAAGACCGCTCTGATGCCGCCGCCTCGCTGGTATC 737 Query 539 GCTGGCCCGTGACAACGATCGCTACACTAAGCTTATCATAGAGGAAGGAGGTGTGGTGCC 598 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 738 TCTGGCCCGTGACAACGATCGCTACACGAAGCTTATCATAGAGGAAGGAGGTGTGGTGCC 797 Query 599 TCTCCTTAAACTGCTCAAGGAAGGGAAGCCCGAGGGGCAAGAGAACGCCGCGCGTGCGTT 658 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 798 TCTCCTTAAACTGCTCAAGGAAGGGAAGCCCGAGGGGCAAGAGAACGCAGCGCGTGCGTT 857 Query 659 AGGGTTACTGGGCCGTGATCCGGAGAGCGTGGAGCACATGATTCACGGCGGCGCTTGTTC 718 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 858 AGGGTTACTGGGACGTGATCCTGAGAGCGTGGAGCACATGATTCACGGCGGCGCTTGTTC 917 Query 719 CGTCTTCGGCAAAGTCCTCAAAGAAGGGCCGATGAAAGTCCAGGCGGTTGTTGCGTGGGC 778 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 918 CGTCTTCGGCAAAGTCCTCAAAGAAGGGCCTATGAAAGTCCAGGCGGTGGTTGCGTGGGC 977 Query 779 TACGTCGGAGCTTGTGTCCAATCACCCCAAGTGCCAAGACGTCTTCGCTCAGCACAATGC 838 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 978 TACGTCGGAGCTTGTGTCCAATCACCCCAAGTGCCAAGACGTCTTCGCTCAGCACAACGC 1037 Query 839 CATTCGGCTACTCGTTGGCCACTTGGCCTTCGAAACGGTGCAAGAGCACAGCAAATACGC 898 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1038 CATTCGGCTACTCGTTGGCCACTTGGCCTTCGAAACCGTGCAAGAGCACAGCAAATACGC 1097 Query 899 CATTGCCACCACCAACAAAGCTACTTCCATTCACCACGCCGTCGCTCTCGCCAAGGAAAA 958 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1098 CATTGCCACCAACAACAAAGCTACTTCCATTCACCACGCCGTCGCTCTCGCCAAGGAAAA 1157 Query 959 TCCTAATTCCACCTCCTCCGCCGCCGCCTTGCCCAAGGGCCTTGACGAGGATCAGAGCTC 1018 |||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||| Sbjct 1158 TCCTAATTCCACCTCC---GCCACCGCCTTGCCCAAGGGTCTTGATGAGGATCAGAGCTC 1214 Query 1019 GATTCCTCATCCTACAGGGAGGCAAATGCCGAATCAGATGCACAATGTGGTCGTCAATAC 1078 ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || Sbjct 1215 TATTCCTCATCCTACAGGGAAGCAAATGCCCAATCAGATGCACAATGTGGTCGTCAACAC 1274 Query 1079 CATGGCTGTTAGGGCAAACCCTCCGAGGAAGTCGACTAGCAACGGTGTGAGCCAGAGTAA 1138 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1275 CATGGCGGTTAGGGCAAACCCTCCGAGGAAGTCGACTAGCAACGGTGTGAGCCAGAGTAA 1334 Query 1139 TGGCGTAAAGCTACCTAGCAATCTACAGCAGCACCAGAATTCAACGTCGAGCGCATCCAA 1198 ||| || |||| |||||||| | ||||||||||||||||||| || |||||||||||||| Sbjct 1335 TGGTGTGAAGCAACCTAGCAGTGTACAGCAGCACCAGAATTCGACTTCGAGCGCATCCAA 1394 Query 1199 GACTCGAGAGCTGGAAGACGCAGCCACCAAGTGTCAGATTAAGGCAATGGCTGCCAGAGC 1258 ||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||| Sbjct 1395 GACTCGAGAGCTGGAAGACTCAGCCACCAAGTGTCAGATTAAGGCGATGGCCGCGAGAGC 1454 Query 1259 GCTGTGGAAGCTGGCGAAAGGCAATTCCACCATCTGCAAAAGCATCACAGAGTCCAGAGC 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1455 GCTGTGGAAGCTGGCGAAAGGCAATTCCACCATCTGCAAAAGCATCACAGAGTCCAGAGC 1514 Query 1319 TCTCCTCTGCTTCGCTGTTCTGATTGACAAGGGCAACGAGGAGGTTC-GATACAACTCAG 1377 ||| ||||||||||||||||||||||| |||||| |||||||||| | |||||||||||| Sbjct 1515 TCTTCTCTGCTTCGCTGTTCTGATTGAGAAGGGCGACGAGGAGGT-CAGATACAACTCAG 1573 Query 1378 CTATGGCGTTAATGGAGATTACGGGCGTTGCAGAGCAGGACGCTGATCTGAGGCGCTCCG 1437 |||||||||| |||||||| || | ||||||||||||||||||||| ||||| || |||| Sbjct 1574 CTATGGCGTTGATGGAGATCACCGCCGTTGCAGAGCAGGACGCTGACCTGAGACGTTCCG 1633 Query 1438 CATTCAAGCCCAACTCCCCGGCCTGCAAGGCTGTGGTGGATCAAGTGCTTAAAATCATCG 1497 | ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| | Sbjct 1634 CGTTCAAGCCCAATTCCCCGGCCTGCAAGGCTGTGGTTGATCAAGTGCTTAGAATCATTG 1693 Query 1498 AGATTGCGGATTCTGAGCTACTCATCCCCTGCATCAGAACCATAGGGAACCTTGCTAGAA 1557 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1694 AGATAGCGGATTCTGAGCTACTCATCCCCTGCATCAGAACCATTGGGAACCTTGCTAGAA 1753 Query 1558 CTTTCAGAGCAACCGAGACACGGATGATTGGGCCTCTGGTGAAGCTTCTGGACGAAAGAG 1617 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1754 CGTTCAGAGCAACCGAGACACGGATGATCGGGCCTCTGGTGAAGCTTCTGGACGAACGAG 1813 Query 1618 AGCCCGAAGTGACAGTGGAAGCCGCAGTTGCCCTCACGAAGTTTGCCTGCACGGATAATT 1677 ||||||||||||||| |||||| || | ||||||||||||||| |||||||||| |||| Sbjct 1814 AGCCCGAAGTGACAGGGGAAGCTGCGGCTGCCCTCACGAAGTTCGCCTGCACGGCGAATT 1873 Query 1678 ACTTGCACAAAGATCACTCGAGGGGCATTATAGAAGCTGGAGGGGGCAAACATTTGGTAC 1737 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 1874 ACTTGCACAAAGATCACTCGAGGGGCATTATAGAAGCTGGAGGGGGCAAACATCTGGTTC 1933 Query 1738 AGTTGGCCTACTTTGGAGAGAGTGGCGTTCAGATTCCGGCATTAGAGCTCCTCTGCTACA 1797 |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| Sbjct 1934 AGTTGGCCTACTTTGGAGAGGGTGGCGTACAGATTCCGGCATTAGAGCTCCTCTGTTACA 1993 Query 1798 TAGCACTCAATGTTCCGGACAGCGAACAGCTGGCGAAGGACGAGGTTCTGGCAGTGTTGG 1857 ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1994 TAGCACTCAATGTCCCAGACAGCGAACAGCTGGCCAAGGACGAGGTTCTGGCAGTGTTGG 2053 Query 1858 AGTGGGCTTCGAAGCAGTCATGGGTGACCCAGCTGGAGAGATTAGAAGCACTGTTGCAGG 1917 | ||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||| Sbjct 2054 AATGGGCTTCGAAGCAGTCATGGGTAACGCAGCTGGAGAGCTTAGAAGCTTTGTTGCAGG 2113 Query 1918 AGGCAAAGAGCAG-ACTGGACCTTTACCAGTCAA-GAGGATCCAGGGGTTTCAATTTCAA 1975 |||||||||| || |||||||||||||||| ||| ||||||| ||||||| ||||||||| Sbjct 2114 AGGCAAAGAG-AGGACTGGACCTTTACCAG-CAAAGAGGATCAAGGGGTTACAATTTCAA 2171 Query 1976 TTGATTCATTGTTTCGATTTT 1996 |||||||||| |||||||||| Sbjct 2172 TTGATTCATTATTTCGATTTT 2192 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99045675285 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5