BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951631
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66140.1 | Symbols: PAD2 | proteasome alpha subunit D2 | chr... 1301 0.0
AT3G51260.1 | Symbols: PAD1 | 20S proteasome alpha subunit PAD... 808 0.0
> AT5G66140.1 | Symbols: PAD2 | proteasome alpha subunit D2 | chr5:26437170-26438764
REVERSE LENGTH=1115
Length=1115
Score = 1301 bits (704), Expect = 0.0
Identities = 748/770 (97%), Gaps = 0/770 (0%)
Strand=Plus/Plus
Query 17 AGAGATGGCTAGATACGATCGAGCAATCACTGTCTTCTCCCCCGACGGTCACCTCTTTCA 76
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 84 AGAGATGGCTAGATACGATCGAGCAATTACTGTCTTCTCCCCCGACGGTCACCTCTTTCA 143
Query 77 AGTCGAATACGCCCTTGAAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTAC 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 AGTCGAATACGCCCTTGAAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTAC 203
Query 137 CGACACCGTCGTCCTCGCCGTCGAGAAGAAATCTACCCCCAAGCTTCAGGATTCTAGATC 196
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 204 CGACACCGTTGTCCTCGCCGTCGAGAAGAAGTCCACCCCCAAGCTTCAGGATTCTAGATC 263
Query 197 AGCCAGAAAAATTGTGAGCCTTGACAATCACATTGCCTTGGCATGCGCCGGGCTCAAGGC 256
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 264 AGCCAGAAAAATTGTGAGCCTTGACAATCACATTGCCTTGGCATGCGCGGGGCTCAAGGC 323
Query 257 AGATGCCCGTGTCTTGATTAACAAAGCAAGGATCGAGTGTCAAAGCCATAGGCTTACACT 316
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 324 TGATGCCCGAGTCTTGATTAACAAAGCAAGGATCGAGTGTCAAAGCCACAGGCTTACACT 383
Query 317 AGAGGACCCTGTCACTGTTGAGTACATCACTCGCTACATTGCTGGCCTTCAACAGAAGTA 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TGAGGACCCTGTCACTGTTGAGTACATCACTCGCTACATTGCTGGCCTTCAACAGAAGTA 443
Query 377 TACCCAAAGTGGTGGTGTCAGACCTTTCGGTCTTTCTACTCTTATCGTTGGCTTCGACCC 436
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 444 TACCCAAAGTGGTGGTGTCAGACCCTTCGGTCTTTCTACTCTTATCGTTGGCTTTGACCC 503
Query 437 TTACTCTCGTCTGCCTTCCCTATATCAGACTGATCCTTCTGGCACTTTCTCTGCTTGGAA 496
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 504 TTACTCTCGCCTCCCTTCCCTATATCAGACTGATCCTTCTGGGACTTTCTCTGCTTGGAA 563
Query 497 AGCTAATGCAACCGGCAGAAACTCCAACTCAATTAGGGAATTCCTGGAGAAGAACTACAA 556
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 564 AGCTAATGCTACCGGCAGAAACTCCAACTCTATTAGGGAATTCCTCGAGAAGAACTACAA 623
Query 557 AGAATCCTCTGGCCAAGAAACTATTAAACTCGCTATCCGTGCTCTTCTTGAGGTAGTTGA 616
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 624 AGAATCCTCTGGCCAAGAAACTATTAAACTCGCTATCCGTGCTCTGCTTGAGGTAGTTGA 683
Query 617 GAGTGGAGGAAAGAACATTGAGGTTGCTGTAATGACACGGGAGGAAACTGGTCTGCGCCA 676
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 684 GAGTGGCGGAAAGAACATTGAGGTTGCCGTAATGACACGGGAGGAAACTGGGCTGCGCCA 743
Query 677 GCTAGAAGAAGCTGAAATTGATGCAATCGTGGCCGAGATCGAAGCTGAAAAGGCGGCCGC 736
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 744 GCTAGAAGAAGCTGAAATTGATGCAATCGTGGCCAAGATCGAAGCTGAAAAGGCGGCCGC 803
Query 737 AGAAGCAGCCAAGAAAGGCCCTCCAAAGGAAACTTGATAAAACAATAACT 786
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGAAGCAGCCAAGAAAGGCCCTCCAAAGGAAACTTGATAAAACAATAACT 853
> AT3G51260.1 | Symbols: PAD1 | 20S proteasome alpha subunit PAD1
| chr3:19030995-19033064 FORWARD LENGTH=1162
Length=1162
Score = 808 bits (437), Expect = 0.0
Identities = 652/758 (86%), Gaps = 6/758 (1%)
Strand=Plus/Plus
Query 19 AGATGGCTAGATACGATCGAGCAATCACTGTCTTCTCCCCCGACGGTCACCTCTTTCAAG 78
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 90 AGATGGCGAGATACGATCGAGCAATCACTGTATTCTCCCCCGATGGTCACCTCTTCCAAG 149
Query 79 TCGAATACGCCCTTGAAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTACCG 138
| || || ||||| ||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 150 TAGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCCGCGGCACAG 209
Query 139 ACACCGTCGTCCTCGCCGTCGAGAAGAAATCTACCCCCAAGCTTCAGGATTCTAGATCAG 198
| || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||
Sbjct 210 ATACTGTCGTCCTCGCCGTCGAAAAGAAATCCACCCCTAAGCTCCAGGATTCCAGATCAG 269
Query 199 CCAGAAAAATTGTGAGCCTTGACAATCACATTGCCTTGGCATGCGCCGGGCTCAAGGCAG 258
| || || || ||||||||||| ||||||||||| ||||| || || || || || ||||
Sbjct 270 CAAGGAAGATAGTGAGCCTTGATAATCACATTGCATTGGCCTGTGCTGGACTGAAAGCAG 329
Query 259 ATGCCCGTGTCTTGATTAACAAAGCAAGGATCGAGTGTCAAAGCCATAGGCTTACACTAG 318
|||| ||||||||||| ||||| || ||||| |||||||||||||| |||||||| | |
Sbjct 330 ATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGCTTACGTTGG 389
Query 319 AGGACCCTGTCACTGTTGAGTACATCACTCGCTACATTGCTGGCCTTCAACAGAAGTATA 378
||||||| || |||||||||||||| ||||| ||||| || || ||||||||||||||||
Sbjct 390 AGGACCCAGTTACTGTTGAGTACATTACTCGGTACATAGCAGGGCTTCAACAGAAGTATA 449
Query 379 CCCAAAGTGGTGGTGTCAGACCTTTCGGTCTTTCTACTCTTATCGTTGGCTTCGA-CCCT 437
| |||||||||||||| || ||||| |||||||| |||||||| ||||| || || |||
Sbjct 450 CTCAAAGTGGTGGTGTGAGGCCTTTTGGTCTTTCCACTCTTATTGTTGGGTTTGATCCC- 508
Query 438 TACTCTCGTCTGCCTTCCCTATATCAGACTGATCCTTCTGGCACTTTCTCTGCTTGGAAA 497
||| ||||| | || | || |||||||| ||||| ||||| || |||||||||||||||
Sbjct 509 TACACTCGTATACCCGCGCTTTATCAGACCGATCCATCTGGTACATTCTCTGCTTGGAAA 568
Query 498 GCTAATGCAACCGGCAGAAACTCCAACTCAATTAGGGAATTCCTGGAGAAGAACTACAAA 557
||||||||||| || |||||||| |||||||||||||| || |||||||| |||||||||
Sbjct 569 GCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAAACTACAAA 628
Query 558 GAATCCTCTGGCCAAGAAACTATTAAACTCGCTATCCGTGCTCTTCTTGAGGTAGTTGAG 617
||| | |||||||||||||| |||| || |||||||||||||| |||||||| ||||||
Sbjct 629 GAAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGGTTGTTGAG 688
Query 618 AGTGGAGGAAAGAACATTGAGGTTGCTGTAATGACACGGGAGGAAACTGGTCTGC-GCCA 676
||||| |||||||||||||||||||||||||||||||| |||||| || |||| || |
Sbjct 689 AGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGGTGTTCTGAAGCAA 748
Query 677 GCTAGAAGAAGCTGAAATTGATG-CAATCGTGGCCGAGATCGAAGCTGAAAAGGCGGCCG 735
|||||||||| ||||||||| || | ||||| ||||||||||| || ||||| || |
Sbjct 749 -CTAGAAGAAGAAGAAATTGATATCATT-GTGGCTGAGATCGAAGCAGAGAAGGCTGCAG 806
Query 736 CAGAAGCAGCCAAGAAAGGCCCTCCAAAGGAAACTTGA 773
| ||||||||||||||||||||| | |||||||| |||
Sbjct 807 CTGAAGCAGCCAAGAAAGGCCCTGCGAAGGAAACATGA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5