BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951637
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 848 0.0
> AT5G66090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: chloroplast, chloroplast
stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
13 growth stages; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr5:26425736-26427172 FORWARD
LENGTH=945
Length=945
Score = 848 bits (459), Expect = 0.0
Identities = 603/669 (90%), Gaps = 23/669 (3%)
Strand=Plus/Plus
Query 3 AACTCCGTCTCAATTTCAATGGCATCTGCTCATTCCCTCGCCGCCGTTCCTGTTCTCGCT 62
||||||||| ||| |||||||||||||||||| ||| | ||||||||| ||||||||| |
Sbjct 78 AACTCCGTCGCAACTTCAATGGCATCTGCTCACTCCATAGCCGCCGTTTCTGTTCTCGAT 137
Query 63 GCGGCCTCCAACTCCAAGCAAGCAACActtccttcttcttcttcttcttcttcctatact 122
|||| | ||||||||||||||||||| | ||||||||||||||||||||| | |
Sbjct 138 GCGG----C--CTCCAAGCAAGCAACACTT-C--CTTCTTCTTCTTCTTCTTCCTCTGCG 188
Query 123 ctccactctctttcttctcttcGATCTAAACCTCGCCAGCAGCACCTCTCCCTTCGCAGT 182
||| || |||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 189 CTCTACCCTCTTTCTTCTCTTCGATCTAAACCTCGCCAGCAGCTTCTCTCCCTACGCAGT 248
Query 183 GTCGCCCTCAAAGACAAAGGGGGACCAAAGGCGCAGGCGAAAGAAGCACAAGGAAATCCA 242
|||| ||| |||||| || |||||||||||| ||||||||| ||| | ||||
Sbjct 249 GTCG--CTC----TCAAAGGTCGAGTAAAGGCGCAGGCAAAAGAAGCAGAAGCTAGTCCA 302
Query 243 ATTACA----GA--GGGAGATGCTTTCAGTAATGTGAAGCATCTTCTTCTGCCAGTTATT 296
| | || || |||||| || ||||||||||||||||||||||| ||||| || |||
Sbjct 303 AGTCCAGTGGGAGTGGGAGACGCATTCAGTAATGTGAAGCATCTTCTCCTGCCGGTGATT 362
Query 297 GATCGGAATCCTTATCTTTCTGAAGGCACCAGACAGGCTGCTGCTACAACAGCTAGTTTG 356
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 363 GATCGGAATCCTTATCTTTCTGAAGGCACCAGACAGGCTGCTGCTACAACAACCAGCTTG 422
Query 357 GCAAACAAGTATGGAGCTGATATCACAGTTGTAGTCATTGACGAAGAAAAGAGAGAATCA 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GCAAAGAAGTATGGAGCTGATATCACAGTTGTAGTCATTGACGAAGAAAAGAGAGAATCA 482
Query 417 TCTTCGGAGCATGAGACTCAAGTATCTAACATCCGGTGGCATTTATCCCAAGGTGGGTTC 476
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 483 TCTTCGGAGCATGAGACTCAAGTATCCAACATCCGGTGGCATTTGTCTGAAGGTGGGTTC 542
Query 477 GAGGAGTTCAAGCTGTTGGAGAGGCTTGGGGAAGG-AAAAAAGGCGACGGCCATAATAGG 535
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 543 GAGGAGTTCAAGCTGTTGGAGAGGCTTGGGGAAGGGAAAAAAG-CGACGGCCATAATAGG 601
Query 536 AGAGGTGGCAGATGAGCTGAGGATGGAGCTGGTGGTGATGAGTATGGAAGCCATCCACTC 595
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 602 AGAGGTGGCAGATGAGCTGAAGATGGAGCTGGTGGTGATGAGCATGGAAGCCATCCACTC 661
Query 596 TAAGTACATTGACGCCAATCTACTCGCTGAGTTCATCCCCTGCCCCGTCCTCCTCTTGCC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TAAGTACATTGACGCCAATCTACTCGCTGAGTTCATCCCCTGCCCCGTCCTCCTCTTGCC 721
Query 656 CCTGTGATC 664
| |||||||
Sbjct 722 CTTGTGATC 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5