BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951646
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1343 0.0
> AT5G66010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:26399528-26400999 FORWARD LENGTH=1098
Length=1098
Score = 1343 bits (727), Expect = 0.0
Identities = 781/808 (97%), Gaps = 0/808 (0%)
Strand=Plus/Plus
Query 5 GAAGACCTTGGCGGCAGGTCATGTACGGATCTAGAGGGGCCATGTTTGGGAGCGGGGGGT 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 65 GAAGACCTTGGCGGCAGGTCATGTACGGATCTAGGGGGGCCATGTTTGGGAGCGGGGGGT 124
Query 65 ACGAGGTTGGATCAAAGAGACAAAGAATGATGCAATCAAATCCCTACTTGGCAGTTGGCA 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 ACGAGGTGGGATCAAAGAGACAAAGAATGATGCAATCAAATCCCTACTTGGCAGTTGGCA 184
Query 125 CCGGATCTACCAGCTTTCCACCTTTTGGCTATGCCTGCGGATTCCCTGTCGTTCGCCTCA 184
| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 185 CTGGACCTACCAGCTTTCCACCTTTTGGCTATGCCGGCGGATTCCCAGTCGTTCGCCTCA 244
Query 185 GGGGTCTTCCCTTCAACTGCGCTGACATTGACATCTTCAAGTTCTTTTCTGGCCTCGACA 244
|||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||
Sbjct 245 GGGGTCTTCCCTTCAACTGCGCTGACATTGACATCTTCGAGTTCTTTGCGGGCCTCAACA 304
Query 245 TTGTCGATGTCCTCCTAGTCAGCAAAAACGGTAAATTCTCCGGGGAGGCCTTTGTGGTGT 304
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 305 TTGTCGATGTCCTGCTCGTCAGCAAAAACGGTAAATTCTCTGGGGAGGCCTTTGTGGTGT 364
Query 305 TTGCCGGCCCTATGCAAGTCGAGATTTCCTTGCAAAGGGACAGACATAATATGGGGAGGA 364
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 365 TTGCCGGCCCTATGCAAGTCGAGATTGCCTTGCAAAGGGACAGACACAATATGGGGAGGA 424
Query 365 GATACGTGGAAGTTTTCCGGTGCTCTAAGCAGGATTACTACAATGCGGTTGCTGCTGAGG 424
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 425 GATACGTGGAAGTTTTCCGGTGCTCTAAGCAGGACTACTACAATGCGGTGGCTGCTGAGG 484
Query 425 AGGGAGCGTATGAGTACGAGGTCCGTGCTAGCCCACCTCCCACCGGGCCATCCAGAGCAA 484
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 485 AGGGAGCGTATGAGTATGAGGTACGTGCTAGCCCACCTCCCACCGGGCCATCCAGGGCAA 544
Query 485 AGAGGTTAAGTGAGAAAGAGAAGCTCGAGTACACAGAGGTTTTGAAGATGCGAGGCCTCC 544
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 545 AGAGGTTTAGTGAGAAAGAGAAGCTTGAGTACACAGAGGTTTTGAAGATGCGAGGCCTCC 604
Query 545 CTTACTCTGTGAACAAACCTCAAATCATAGAGTTTTTCAGCGGGTACAAGGTTATCGAAG 604
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 605 CTTACTCGGTGAACAAACCTCAAATCATAGAGTTTTTCAGCGGGTACAAGGTTATCCAAG 664
Query 605 GACGGGTACAGGTTGTGTGTCGACCTGATGGGAAGGCCACGGGAGAGGCATTTGTGGAGT 664
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 665 GACGGGTACAGGTTGTGTGTCGGCCTGATGGGAAGGCCACGGGAGAGGCATTTGTGGAGT 724
Query 665 TTGAGACGGGGGAGGAGGCGAGGAGGGCAATGGCTAAGGACAAAATGTCGATTGGGTCAA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TTGAGACGGGGGAGGAGGCGAGGAGGGCAATGGCTAAGGACAAAATGTCGATTGGGTCAA 784
Query 725 GGTATGTGGAGTTGTTTCCAACCACACGTGAAGAGGCTCGAAGGGCTGAGGCCAGGTCTA 784
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 785 GGTATGTGGAGTTGTTTCCAACTACACGTGAAGAGGCTCGAAGGGCTGAGGCCAGATCTA 844
Query 785 GGCAATGACTCTTTCCTTCACTATGTAT 812
||||||||||||||||||||||||||||
Sbjct 845 GGCAATGACTCTTTCCTTCACTATGTAT 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5