BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951661

Length=328
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58720.1 | Symbols:  | smr (Small MutS Related) domain-conta...   477    3e-134


> AT5G58720.1 | Symbols:  | smr (Small MutS Related) domain-containing 
protein | chr5:23719702-23723137 REVERSE LENGTH=1997
Length=1997

 Score =  477 bits (258),  Expect = 3e-134
 Identities = 303/325 (93%), Gaps = 1/325 (0%)
 Strand=Plus/Plus

Query  4    TCTATAATCGTGCGATAATGAAGCAGAAGGGCCAGCATAAGAAGAAGAAGAAGCGATCCT  63
            |||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct  147  TCTATAATTGTACGATAATGAAGCAGAAGAACCAGCATAAGAAGAAGAAGAAGCGATCCT  206

Query  64   GCGCCGCGAAATCTTCCGGTGATGGAACGGCGTCGGACGGGAACAAAAAAGATGTGGAGG  123
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  207  GCGCCGCGAAACCTTCCGGTGATGGAACGACGTCGGACGGGAACAAAAAAGATGTGGAGG  266

Query  124  AGGAGAGGAAAGACGGTGAAGGTACGAAGGAGTTAGAAAAAGTTGaaaaaaaaaTTATCG  183
            | |||||||| ||||||||||| | || |||| ||||||| |||| ||||||  ||||||
Sbjct  267  AAGAGAGGAAGGACGGTGAAGGAAAGAGGGAGATAGAAAACGTTGGAAAAAATTTTATCG  326

Query  184  AATCGTTAATGGAAGCCTTTTGCTCGGTTTCAATGGAGGAAGCGATGGCTGCTTATAAAG  243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  327  AATCGTTAATGGAAGCCTTTTGCTCGGTTTCAATGGAGGAAGCGATGGCTGCTTATAAGG  386

Query  244  AAGCAGGCGGAGATCTGAACAAAGCCGCAGAGATTTTGTCGGATCTGGTGCGCAAGCGGC  303
            |||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||| 
Sbjct  387  AAGCAGGCGGAGATCTGAACAAAGCCGCTGAGATTTTATCGGATCTGGTG-GAAAGCGGT  445

Query  304  GATGATCCGTCGACGAGTTCGGTGG  328
            |||||||||||||||||||||||||
Sbjct  446  GATGATCCGTCGACGAGTTCGGTGG  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15281395696


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5