BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951664
Length=611
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66990.1 | Symbols: | RWP-RK domain-containing protein | ch... 885 0.0
> AT5G66990.1 | Symbols: | RWP-RK domain-containing protein |
chr5:26744257-26745362 REVERSE LENGTH=834
Length=834
Score = 885 bits (479), Expect = 0.0
Identities = 545/576 (95%), Gaps = 7/576 (1%)
Strand=Plus/Plus
Query 18 AGATATAAT-GAGCGGATGGTGGAATGATAATAATGGTAACTACAATAACCAGGTCGAAC 76
|||||| || ||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 264 AGATAT-ATCGAGTGGATGGTGGAACGAGAATAATGGTAACTACAATAACCAGGTCGAAC 322
Query 77 CAATTCTTGATGATATTTCAAGAACTAATACCATGGGAGATCCAAAGATGGAG-AAGATA 135
||| |||||||| |||||||||||||||||||||||||||||||| |||||| || |||
Sbjct 323 CAAACCTTGATGAAATTTCAAGAACTAATACCATGGGAGATCCAAATATGGAGCAA-ATA 381
Query 136 TTGCATGAAGATGTTAACACAACTATAAAAGAGAAAACAAGCCAGAAGAGGATAATTATG 195
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 382 TTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAACAAGCCAGAAGAGGATAATTATG 438
Query 196 AAGAGGCGATATAGAGAAGATGGAGACATCAATAGTTTGTCAAGGGAAATGATGAAGCAG 255
||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 439 AAGAGGCGATATAGAGAAGATGGAGTCATCAATAATATGTCAAGGGAAATGATGAAGCAG 498
Query 256 TACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTTAACATTGGTGTAACCCTCTTG 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTTAACATTGGTGTAACCCTCTTG 558
Query 316 AAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCTCACCGTAAGCTCACGAGCCTT 375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCTCACCGTAAGCTCACGAGCCTA 618
Query 376 AACGCTCTAATTACCAATCTCAAGGACTTATTAGGGAACACGGAGGGAAAAACGCCCAAG 435
|||||||||||| | |||||||||||||| |||||||||||| |||| | ||||||||||
Sbjct 619 AACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGAACACGAAGGGGAGAACGCCCAAG 678
Query 436 AGTAAGCTGAGGAATGCTTTGGAGCTTTTGGAGATGGAGAAGAAGATGATTGAGGAAGTT 495
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 AGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAGAAGAAGATGATTGAGGAAGTT 738
Query 496 CCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAAGACAGGCTTGCTTCAAGGCTAAA 555
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 739 CCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAAGACAGGCTTGCTTCAAGGCTAAA 798
Query 556 TACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 591
||||||| |||| |||||||||| ||||||||||||
Sbjct 799 TACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29437210142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5