BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951665
Length=527
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80340.1 | Symbols: GA4H, ATGA3OX2, GA3OX2 | gibberellin 3-o... 760 0.0
> AT1G80340.1 | Symbols: GA4H, ATGA3OX2, GA3OX2 | gibberellin 3-oxidase
2 | chr1:30200693-30202200 REVERSE LENGTH=1083
Length=1083
Score = 760 bits (411), Expect = 0.0
Identities = 461/486 (95%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 6 ACACAAGCCTTTTAGCATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCA 65
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ACATAAGCCTTTTAGCATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCA 81
Query 66 CATCCCACTCTCAAACCTACCCGACTTCAAAGCCCTCCCAGATTCTTACACATGGACCCC 125
||||||||||||||||| ||| ||||||||| | ||||| ||||||||||| ||||| ||
Sbjct 82 CATCCCACTCTCAAACCCACCTGACTTCAAATCTCTCCCGGATTCTTACACGTGGACTCC 141
Query 126 CAAAGATGATCTCCTCTTCTCTGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCT 185
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 142 TAAAGATGATCTCCTCTTCTCCGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCT 201
Query 186 CTCCGATCCCCACGTGACCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTACA 245
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 202 CTCCGATATCCACGTGGCCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTCCA 261
Query 246 GATCAGCAACCACGGCGTACCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAG 305
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GATCACCAACCACGGCGTCCCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAG 321
Query 306 TCTTTTCCGGCTTAACGTGCAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTC 365
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TCTTTTCCGGCTTCCCGTACAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTC 381
Query 366 CGGCTACGGCGTGGCTCGTATTGCTTCTTTCTTTAATAAGAAAATGTGGTCCGAAGGTTT 425
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 382 CGGCTACGGCGTAGCTCGTATTGCTTCGTTCTTTAATAAGAAGATGTGGTCCGAAGGTTT 441
Query 426 CACCGTTATTGGCTCTCCTCTCCAAGATTTCCGTAAACTCTGGCCCAGCCATCACCTCAA 485
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 442 CACCGTTATTGGCTCTCCCCTCCACGATTTCCGTAAACTCTGGCCCAGCCACCACCTCAA 501
Query 486 ATACTG 491
||||||
Sbjct 502 ATACTG 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25217541794
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5