BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951667
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78970.2 | Symbols: LUP1, ATLUP1 | lupeol synthase 1 | chr1:... 1027 0.0
AT1G78960.1 | Symbols: ATLUP2, LUP2 | lupeol synthase 2 | chr1:... 521 3e-147
> AT1G78970.2 | Symbols: LUP1, ATLUP1 | lupeol synthase 1 | chr1:29703340-29707844
FORWARD LENGTH=2477
Length=2477
Score = 1027 bits (556), Expect = 0.0
Identities = 653/698 (94%), Gaps = 13/698 (2%)
Strand=Plus/Plus
Query 1 TATATATAGGGTCA-C---CGTCGTTATGTGGAAGTTGAAGATAGGAAAGGGAAATGGTG 56
||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 49 TATCTATAGGGTCATCGTACGTCGTTATGTGGAAGTTGAAGATAGGAAAGGGAAATGGAG 108
Query 57 AAGATCCGCATTTATTCAGTAGCAATAACTTCGTCGGACGTCAAACATGGGAGTTTGATC 116
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 109 AAGATCCGCATTTATTCAGCAGCAATAACTTCGTCGGACGTCAAACATGGAAGTTTGATC 168
Query 117 ACCAAGCCGGCTCACCAGAGGAAAGAGCTTCCGTCGAAGAAGCTCGCCGAAGTTTCTT-G 175
|| ||||||||||||| |||||| ||||| ||||||||||||||||||| ||||||| |
Sbjct 169 ACAAAGCCGGCTCACCGGAGGAACGAGCTGCCGTCGAAGAAGCTCGCCGGGGTTTCTTGG 228
Query 176 ATCAACCGTTCTCGTGTTAAAGGTTGCAGTGATCTCTTATGGCGAATGCAATTTCTAAGA 235
|| ||||||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 229 AT-AACCGTTTTCGTGTTAAAGGTTGCAGTGATCTATTGTGGCGAATGCAATTTCTAAGA 287
Query 236 GAGAAGAAATTCGAACAAGGCATACCGCAACCT---A-CTA-AAATAAAGGAGGAAATAA 290
|||||||||||||||||||||||||| ||| || | ||| || | | || |||||||
Sbjct 288 GAGAAGAAATTCGAACAAGGCATACCACAA-CTAAAAGCTACTAACATA-GAAGAAATAA 345
Query 291 CGTATGAAACAACGACAAATGCATTACGAAGAGGCGTTCGTTACTTCTCAGCTTTGCAAG 350
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 346 CGTATGAAACAACGACAAATGCATTACGAAGAGGCGTTCGTTACTTCACGGCTTTGCAAG 405
Query 351 CCTCCGACGGCCATTGGCCTGGAGAAATCACTGGTCCGCTTTTCTTCCTTCCTCCTCTCA 410
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 406 CCTCCGACGGCCATTGGCCGGGAGAAATCACCGGTCCGCTTTTCTTCCTTCCTCCTCTCA 465
Query 411 TATTTTGTTTGTACATTACCGGACATCTGGAGGAAGTATTCGATGCTGAACATCGCAAAG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TATTTTGTTTGTACATTACCGGACATCTGGAGGAAGTATTCGATGCTGAACATCGCAAAG 525
Query 471 AGATGCTACGGCATATCTATTGTCATCAGAACGAAGATGGTGGATGGGGATCACATATCG 530
|||||||| | |||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 526 AGATGCTAAGACATATCTATTGTCACCAGAACGAAGATGGTGGATGGGGATTACACATCG 585
Query 531 AAAGCAAGAGTGTTATGTTCTGCACCGTGTTGAATTACATATGTTTTCGTATGCTTGGAG 590
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 586 AAAGCAAGAGTGTTATGTTCTGCACCGTGTTGAATTACATATGTTTACGTATGCTTGGAG 645
Query 591 AAAATCCTGAACAAGACGCGTGCAAACGAGCTAGACAATGGATTCTTGACCGTGGTGGTG 650
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 646 AAAATCCTGAACAAGACGCATGCAAACGAGCTAGACAATGGATTCTTGACCGCGGTGGAG 705
Query 651 TGATTTTTATTCCTTCTTGGGGGAAATTTTGGCTCTCG 688
|||| |||||||||||||||||||||||||||||||||
Sbjct 706 TGATCTTTATTCCTTCTTGGGGGAAATTTTGGCTCTCG 743
> AT1G78960.1 | Symbols: ATLUP2, LUP2 | lupeol synthase 2 | chr1:29696470-29701263
FORWARD LENGTH=2578
Length=2578
Score = 521 bits (282), Expect = 3e-147
Identities = 571/704 (81%), Gaps = 46/704 (7%)
Strand=Plus/Plus
Query 14 ACCGTCGTTATGTGGAAGTTGAAGATAGGAAAGGGAAATGGTGAAGATCCGCATTTATTC 73
||| |||||||||||||||||||||||||| |||||||||| |||||||| | || |||
Sbjct 39 ACCATCGTTATGTGGAAGTTGAAGATAGGAGAGGGAAATGGAGAAGATCCTTACTTGTTC 98
Query 74 AGTAGCAATAACTTCGTCGGACGTCAAACATGGGAGTTTGATCACCAA-GCCGGCTCACC 132
|| ||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 99 AGCAGCAACAACTTCGTCGGACGTCAAACATGGGAGTTTGATC-CCAAAGCCGGCACACC 157
Query 133 AGAGGAAAGAGCTTCCGTCGAAGAAGCTCGCCG-AAGTTTCTT-GATCAACCGTTCTCGT 190
|||||| |||| |||||||||| |||||||| || | | || || ||||||| | |||
Sbjct 158 TGAGGAACGAGCCGCCGTCGAAGATGCTCGCCGGAACTAT-TTAGA-CAACCGTCCCCGT 215
Query 191 GTTAAAGGTTGCAGTGATCTCTTATGGCGAATGCAATTTCT-AAGAGAGAAGAAATTCGA 249
||||||||||||||||||||||| ||||||||||||||| | || |||| |||||||||
Sbjct 216 GTTAAAGGTTGCAGTGATCTCTTGTGGCGAATGCAATTTTTGAA-AGAGGCGAAATTCGA 274
Query 250 ACAAG-GCATACCGCAACCTACTAAA-ATAAAGGA-GG--AA---ATAACGTATGAAACA 301
|||| | || |||| | | || || | || || || ||||| || ||| |
Sbjct 275 GCAAGTG-ATCCCGC--CGG--TGAAGATCGACGACGGCGAAGGCATAACTTAC-AAA-A 327
Query 302 ACG--ACAAATGCATTACGAAGAGGC-GTT-CGTTACTTCTCAGCTTTGCAAG-CCTCCG 356
||| || |||| ||||| |||| | ||| | || || ||| |||||||| | ||||||
Sbjct 328 ACGCGACGGATGCGTTACGGAGAG-CAGTTTCTTT-CTACTCGGCTTTGCA-GTCCTCCG 384
Query 357 ACGGCCATTGGCCTGGAG-AAATCACTGGTCCGCTTTTCTTCCTTCCTCC-TCTCATATT 414
| ||||| ||||| || | ||||||| || | || |||||||||||||| | | ||||
Sbjct 385 ATGGCCACTGGCC-GGCGGAAATCACCGGAACTCTCTTCTTCCTTCCTCCAT-TGGTATT 442
Query 415 TTGTTTGTACATTACCGGACATCTGGAGGAAG-TATTCGATGCTGAACATCGCAAAGAGA 473
|||||| || || || ||||| || ||| ||| |||| ||||| ||||||||||||||||
Sbjct 443 TTGTTTCTATATCACAGGACACCTCGAG-AAGATATTTGATGCAGAACATCGCAAAGAGA 501
Query 474 TGCTACGGCATATCTATTGTCATCAGAACGAAGATGGTGGATGGGGATCACATATCGAAA 533
|||| |||||||||||||| || ||||||||||| ||||||||||| | |||||| ||
Sbjct 502 TGCTTCGGCATATCTATTGCCACCAGAACGAAGACGGTGGATGGGGTTTACATATTGAGG 561
Query 534 GCAAGAGTGTTATGTTCTGCACCGTGTTGAATTACATATGTTTTCGTATGCTTGGAGAAA 593
| ||||| ||||||||||||||||| ||||||||||||| || |||||||| ||||||
Sbjct 562 GAAAGAGCGTTATGTTCTGCACCGTACTGAATTACATATGCTTGCGTATGCTCGGAGAAG 621
Query 594 ATCC---TGAA---C--AAGA-CGCGTGCAAACGAGCTAGACAATGGATTCTTGACCGTG 644
||| || | | || | ||| |||||||| || || |||||||||||||||| ||
Sbjct 622 GTCCCAATGGAGGGCGCAATAACGCCTGCAAACGGGCCAGGCAATGGATTCTTGACCATG 681
Query 645 GTGGTGTGATTTTTATTCCTTCTTGGGGGAAATTTTGGCTCTCG 688
||||||||| || ||||||||||||||| ||| |||||||||||
Sbjct 682 GTGGTGTGACTTATATTCCTTCTTGGGGAAAAATTTGGCTCTCG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5