BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951668
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32120.1 | Symbols: HSP70T-2 | heat-shock protein 70T-2 | ch... 2610 0.0
> AT2G32120.1 | Symbols: HSP70T-2 | heat-shock protein 70T-2 |
chr2:13651510-13653920 REVERSE LENGTH=2092
Length=2092
Score = 2610 bits (1413), Expect = 0.0
Identities = 1621/1723 (94%), Gaps = 8/1723 (0%)
Strand=Plus/Plus
Query 14 GCAGGAAATGGCAGAA-CAAGAATACACAGTAGCATCAGACAGTGAAAACACTGGAGAGG 72
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 184 GCAGGAAATGGCAGAAGC-AGCATACACAGTAGCATCAGACAGTGAAAACACTGGAGAGG 242
Query 73 AGAAATCATCATCATCTCCTTCGTTACCCGAAATCGCCGTTGGTATCGACATTGGTACTT 132
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 243 AGAAATCATCATCATCTCCTTCATTACCCGAAATCGCCCTTGGTATCGACATTGGTACTT 302
Query 133 CTCAATGCAGTATAGCTGTTTGGAACGGCTCTCAAGTTCACATCTTGAGGAACACAAGAA 192
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 303 CTCAATGCAGTATAGCTGTTTGGAACGGTTCTCAAGTTCACATCTTGAGGAACACAAGAA 362
Query 193 ACCAGAAACTCATCAAATCATTTGTAACTTTCAAAGACGAAGTTCCTGCTGGTGGAGTTA 252
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 363 ACCAGAAGCTCATCAAATCATTTGTCACTTTCAAAGATGAAGTTCCTGCTGGTGGTGTTA 422
Query 253 GCAACCAGCTCGCACACGAGCAGGAAATGCTAACTGGAGCCGCTATCTTCAACATGAAGC 312
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 423 GCAACCAGCTCGCACATGAGCAGGAAATGCTAACCGGAGCCGCTATCTTCAACATGAAGC 482
Query 313 GGCTCATTGGCCGTGCAGACACTGATCCTGTGGTTCACGCTAGCAAGAACCTTCCTTTCT 372
||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGCTCGTTGGTCGTGTAGACACTGATCCTGTGGTTCACGCTAGCAAGAACCTTCCTTTCT 542
Query 373 TGGTTCAAACTCTTGACATTGGAGTCAGACCGTTTATCGCGGCTTTGGTGAACAATGCTT 432
|||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||
Sbjct 543 TGGTTCAAACTCTTGATATTGGAGTTAGACCGTTTATTGCAGCTTTGGTGAACAATGCTT 602
Query 433 GGAGATCTACGACTCCTGAGGAAGTTTTAGCGATATTCCTTGTGGAATTGCGTCTAATGG 492
||||||| || || || |||||||||||||| ||||| || ||||| || ||||| ||||
Sbjct 603 GGAGATCAACAACACCAGAGGAAGTTTTAGCTATATTTCTGGTGGAGTTACGTCTGATGG 662
Query 493 CTGAAGCTCAGTTGAAACGGCCTGTGAGAAATGTGGTACTCACGGTTCCGGTTTCGTTTT 552
||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| |
Sbjct 663 CTGAAGCTCAGTTGAAACGTCCTGTGAGAAATGTAGTGCTTACGGTTCCGGTTTCGTTCT 722
Query 553 CTAGGTTCCAGCTCACACGGATT-GAACGTGCTTGTGCTATGGCTGGACTTCATGTACTT 611
|||||||||||||||||||| || ||| | ||||| |||||||||||||||||||| |||
Sbjct 723 CTAGGTTCCAGCTCACACGG-TTCGAAAGAGCTTGCGCTATGGCTGGACTTCATGTTCTT 781
Query 612 CGTTTGATGCCAGAACCAACTGCAATTGCGTTACTTTATGCGCAACAGCAGCAGATGACT 671
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 782 CGTTTGATGCCGGAACCAACTGCTATTGCGTTGCTTTATGCGCAACAGCAGCAGATGACT 841
Query 672 ACGCACGATAACATGGGAAGCGGAAGCGAGAGGCTTGCGGTTATATTCAATATGGGTGCT 731
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 842 ACCCATGATAACATGGGAAGCGGAAGCGAGAGGCTTGCGGTTATATTCAATATGGGAGCT 901
Query 732 GGTTATTGCGATGTTGCTGTTACTGCAACTGCTGGTGGTGTTTCACAGATAAAAGCTTTA 791
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 902 GGTTACTGCGATGTTGCGGTTACTGCTACTGCTGGTGGTGTTTCACAGATAAAAGCTTTA 961
Query 792 GCTGGAAGCCCCATTGGAGGAGAAGACGTTTTGCAGAACACAATGCGCCATATTGCGCCA 851
||||| ||||||||||| || |||||| |||||||||||||||| |||||||| || |||
Sbjct 962 GCTGGTAGCCCCATTGGGGGTGAAGACATTTTGCAGAACACAATTCGCCATATCGCTCCA 1021
Query 852 CC-AACTGAAGAAGCTTCGGGGTTGCTCCGTGTAGCGACACAGGACGCTATTCACAGGCT 910
|| || ||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1022 CCTAA-TGAAGAAGCTTCGGGGTTGCTTCGTGTAGCGGCACAGGACGCGATTCACAGGCT 1080
Query 911 ATCGGATCAAGAAAATGTCCAAATTGAAGTGGATTTGGGAAACGGTAACAAGATTTCCAA 970
| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1081 AACGGATCAAGAAAATGTCCAAATTGAAGTGGATTTGGGAAATGGTAACAAGATATCCAA 1140
Query 971 GGTTCTTGATAGATTGGAGTTTGAGAAAGTGAACCAGAAGGTATTTGAGGAATGTGAGAG 1030
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1141 GGTTCTTGATAGGTTAGAGTTTGAGGAAGTGAACCAGAAGGTATTTGAGGAATGTGAGAG 1200
Query 1031 ACTTGTTGTGCAGTGTCTGCGAGATGCGAGAGTCGA-GGTTGGTGATATCGATGATGTGA 1089
||||||||||||||| |||||||||||||||||| | || |||||||||||||||| |||
Sbjct 1201 ACTTGTTGTGCAGTGCCTGCGAGATGCGAGAGTCAATGG-TGGTGATATCGATGATTTGA 1259
Query 1090 TAATGGTTGGAGGGTGTTCTTACATCCCGAAAGTAAGAACTATTATCAAGAACGTGTGCA 1149
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1260 TAATGGTTGGAGGGTGTTCGTACATCCCGAAAGTAAGAACTATTATCAAGAACGTATGCA 1319
Query 1150 AGAAAGATGAGATTTACAAAGGCGTGAATCCATTAGAAGCTGCGGTTAGGGGAGCTGCCT 1209
|||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1320 AGAAGGATGAGATATACAAAGGCGTGAATCCTTTAGAAGCTGCGGTTAGAGGAGCTGCTT 1379
Query 1210 TGGAAGGTGCGGTGACTTCAGGGATTCATGATCCGTTTGGGAGCTTAGATCTCTTAACCA 1269
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1380 TGGAAGGTGCGGTGACTTCAGGGATTCATGATCCTTTTGGGAGCTTAGATCTGTTAACCA 1439
Query 1270 TACAAGCCACACCTCTTGCAGTTGGAGTAAGAGCTAACGGAAACAAATTCATACCCGTGA 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TACAAGCCACACCTCTTGCAGTTGGAGTAAGAGCTAACGGAAACAAATTCATACCCGTGA 1499
Query 1330 TTCCGCGTAACACGATGGTTCCAGCGCGGAAAGACCTCTTCTTCACAACGGTTCAAGACA 1389
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTCCGCGTAACACAATGGTTCCAGCGCGGAAAGACCTCTTCTTCACAACGGTTCAAGACA 1559
Query 1390 ACCAGAAAGAAGCTCTGATCATTATATACGAAGGAGAAGGAGAGACTGTTGAAGAGAACC 1449
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1560 ACCAGAAGGAAGCTCTGATCATTATATACGAAGGAGAAGGAGAGACTGTTGAAGAGAATC 1619
Query 1450 ATCTTCTTGGGTATTTCAAGATAGTTGGGATTCCGCCGGCGCCTAAAGGTGTTCCGGAGA 1509
|||||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||||
Sbjct 1620 ATCTTCTTGGTTATTTCAAGCTCGTTGGGATTCCGCCAGCACCGAAAGGTGTTCCAGAGA 1679
Query 1510 TCAATGTTTGTATGGACATCGATGCGTCGAATGCTTTACGGGTTTTTGCAGCTGTGTTGA 1569
||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||
Sbjct 1680 TCAATGTGTGTATGGACATTGATGCATCAAATGCTTTACGGGTTTTCGCAGCTGTGTTGA 1739
Query 1570 TGCCGGGATCTTCGACTCCGGTGGTTCCTGTGATTGAGGTGAGGATGCCTACAGTTGATG 1629
||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1740 TGCCGGGATCTTCGAGTCCAGTGGTTCCTGTGATTGAGGTGAGGATGCCTACGGTTGATG 1799
Query 1630 ATGGACATGGTTGGTGTGCTCAAGCTTTGAATGTGAAATATGGATCTACTCTTGATTTGA 1689
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1800 ATGGACATGGTTGGTGTGCTCAAGCTTTGAATGTGAAATATGGAGCTACTCTTGATTTGA 1859
Query 1690 TTACTCTTCAGAGGAAGATGTAAGATTAAAATAAAATGATGTT 1732
||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1860 TTACTCTTCAGAGAAAGATGTAAGATTAAAATAAAATGGTGTT 1902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85642129770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5