BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951673
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32070.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1234 0.0
AT1G80780.3 | Symbols: | Polynucleotidyl transferase, ribonucl... 577 6e-164
> AT2G32070.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr2:13640668-13641953 REVERSE
LENGTH=1152
Length=1152
Score = 1234 bits (668), Expect = 0.0
Identities = 747/786 (95%), Gaps = 2/786 (0%)
Strand=Plus/Plus
Query 1 ACGAAAATCTCGAATCAGAAATGGCTCTGATTCGAGAAGTCGTCGACGATTTCCCATTCG 60
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 213 ACGACAATCTCGAATCAGAGATGGCTCTGATTCGAGAAGTCGTAGACGATTTCCCATTCG 272
Query 61 TAGCGATGGACACAGAGTTCCCCGGAATCGTGTGTAGACCAGTGGGAACATTCAAAACCA 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 273 TAGCGATGGACACAGAGTTCCCAGGAATCGTGTGTAGACCAGTGGGAACATTCAAAACCA 332
Query 121 ACACAGAGTACCACTATGAAACCCTCAAAACAAACGTCAACATACTCAAGATGATTCAGC 180
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 333 ACACAGAGTACCACTACGAAACTCTCAAAACAAACGTCAACATACTCAAGATGATTCAGC 392
Query 181 TCGGACTCACTTTCTCTGATGAGAAAGGAAACCTCCCAACGTGTGGAACAGACAACAAAT 240
| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 393 TTGGACTCACTTTCTCTGATGAGAAAGGTAACCTCCCAACTTGTGGAACAGACAACAAGT 452
Query 241 ACTGCATCTGGCAGTTCAATTTCCGTGAATTCGACCTCGAATCCGACATTTATGCTACCG 300
| ||||||||||||||||||||||| |||||||||||||||||||| || || |||||||
Sbjct 453 ATTGCATCTGGCAGTTCAATTTCCGCGAATTCGACCTCGAATCCGATATCTACGCTACCG 512
Query 301 ATTCCATCGAGCTTCTTCGTCAATCAGGCATCGATTTCGCT-AAAAACAACCAATTCGGT 359
|||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 513 ATTCGATCGAGCTTCTTCGTCAATCAGGCATCGATTTCG-TGAAAAACAACGAATTCGGT 571
Query 360 ATCGATTCGAAACGTTTCGCCGAGCTTTTGATGTCATCAGGGATTGTTTTGAATGAAAAC 419
||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 572 ATCGATTCGAAGCGGTTCGCTGAGCTTTTGATGTCTTCAGGGATTGTGTTGAATGAAAAC 631
Query 420 GTTCATTGGGTTACATTCCACAGCGGATATGATTTTGGTTACTTGTTGAAGCTATTGACT 479
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 632 GTTCATTGGGTTACATTCCACAGCGGATACGATTTCGGTTACTTGTTGAAGCTATTGACT 691
Query 480 TGTCAGAATCTGCCGGAAACACAAACGGGGTTTTTCGAGATGATCAGTGTGTATTTCCCG 539
||||||||||| || || || ||||| ||||| |||||||||||||||||||||||||||
Sbjct 692 TGTCAGAATCTTCCCGAGACGCAAACAGGGTTCTTCGAGATGATCAGTGTGTATTTCCCG 751
Query 540 AGGGTTTACGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCATGGAGGTCTGAAC 599
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 AGGGTTTATGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCATGGAGGTCTGAAT 811
Query 600 AAATTGGCGGAGCTGCTTGAAGTTGAGAGAGTTGGGATATGTCACCAGGCGGGATCGGAT 659
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 812 AAATTGGCGGAGCTGCTTGATGTTGAGAGAGTTGGGATTTGTCACCAGGCCGGATCGGAT 871
Query 660 AGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTCATTGGTTCAATG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 AGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTCATTGGTTCAATG 931
Query 720 GAGAAATATTCTGGTGTTTTGTATGGATTAGGTGTTGAGAATGGTCAGATTGTTCATTGA 779
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 932 GAGAAGTATTCTGGTGTTTTGTATGGTTTAGGTGTTGAGAATGGTCAGATTGTTCATTGA 991
Query 780 TAAAAG 785
||||||
Sbjct 992 TAAAAG 997
> AT1G80780.3 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:30358162-30359606 FORWARD
LENGTH=1156
Length=1156
Score = 577 bits (312), Expect = 6e-164
Identities = 614/758 (81%), Gaps = 27/758 (4%)
Strand=Plus/Plus
Query 17 AGAAATGGCTCTGATTCGAGAAGTCGTCGACGATTTCCCATT-CGTAGCGATGGACACAG 75
|||||||| |||||| ||||| ||||||||||| ||||| || ||| || |||||||| |
Sbjct 338 AGAAATGGATCTGATCCGAGATGTCGTCGACGACTTCCC-TTACGTCGCCATGGACACTG 396
Query 76 AGTTCCCCGGAATCGTGTGT-AGACCAGTGGGAACATTCAAAACCAACACAGAGTACCAC 134
|||||||||| ||||| || |||| || ||||| |||||| ||||| | || ||||||
Sbjct 397 AGTTCCCCGGCATCGT-CGTCCGACCTGTCGGAACTTTCAAATCCAACGCTGATTACCAC 455
Query 135 TATGAAACCCTCAAAACAAACGTCAACATACTCAAGATGATTCAGCTCGGACTCACTTTC 194
|| |||||| | || || ||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 456 TACGAAACCTTGAAGACGAACGTCAACATCCTCAAGATGATCCAGCTTGGCCTCACTTTC 515
Query 195 TCTGATGAGA-AAGGAAACCTCCCAACGTGTGGAACAGACAACAAATACTGCATCTGGCA 253
|| |||| | |||| |||||||| || ||||| || | |||| || |||||||||||
Sbjct 516 TCCAATGA-ACAAGGCAACCTCCCTACCTGTGGCACTG---ACAAGTATTGCATCTGGCA 571
Query 254 GTTCAATTTCCGTGAATTCGACCTCGAATCCGACAT-TTATGCTAC-CGATTCCATCGAG 311
||||||||||| |||||||| ||||| ||||| || || ||| | |||||||||||||
Sbjct 572 ATTCAATTTCCGAGAATTCGATCTCGATTCCGATATCTT-CGCT-CTCGATTCCATCGAG 629
Query 312 CTTCTTC--GTCAATCAGGCATCGA-TTTCGCTAAAAACAAC-CAATTCGGTATCGATTC 367
|||| || | |||||||||||||| || || |||||| || | | ||| ||||||||
Sbjct 630 CTTC-TCAAG-CAATCAGGCATCGACCTT-GCCAAAAAC-ACGCTAGACGGGATCGATTC 685
Query 368 GAA-ACGTTTCGCCGAGCTTTTGATGTCATCAGGGATTGTTTTGAATGAAAACGTTCATT 426
|| | | ||||| ||||| || ||||| || ||||| || ||||| |||||||| ||||
Sbjct 686 CAAGA-GATTCGCAGAGCTCTTAATGTCCTCCGGGATCGTCTTGAACGAAAACGTGCATT 744
Query 427 GGGTTACATTCCACAGCGGATATGATTTTGGTTACTTGTTGAAGCTATTGACTTGTCAGA 486
|||||||||||||||| || || ||||| || |||||| | ||||| |||||||| || |
Sbjct 745 GGGTTACATTCCACAGTGGGTACGATTTCGGATACTTGCTAAAGCTCTTGACTTGCCAAA 804
Query 487 ATCTGCCGGAAACACAAACGGGGTTTTTCGAGATGATCAGTGTGTATTTCCCGAGGGTTT 546
| |||||||| | ||||| | || ||| || | |||| || ||||| |||| || |
Sbjct 805 ACCTGCCGGATTCGCAAACAGACTTCTTCAAGCTCATCAACGTTTATTTTCCGACCGTGT 864
Query 547 ACGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCATGGAGGTCTGAACAA-ATTG 605
|||| || |||||| ||||||||||||| || || ||||| || ||||| ||||| ||
Sbjct 865 ACGACATTAAACACCTGATGAAGTTCTGCAACAGCCTTCACGGTGGTCTCAACAAGCTT- 923
Query 606 GCGGAGCTGCTTGAAGTTGAGAGAGTTGGGATATGTCACCAGGCGGGATCGGATAGCTTG 665
|||||| |||| ||||| |||||||||||||| |||||||| || || |||||||| ||
Sbjct 924 GCGGAGTTGCTGGAAGTGGAGAGAGTTGGGATCTGTCACCAAGCTGGTTCGGATAGTTTA 983
Query 666 TTAACGTCGTGTACATTCAGGAAGCTGC-AGGAGAATTTCTTCATTGGTTCAATGGAGAA 724
| ||||| ||||| ||||| ||||| | |||||||||||||| ||||| | || | ||
Sbjct 984 CTCACGTCTTGTACTTTCAGAAAGCT-CAAGGAGAATTTCTTCGTTGGTCCGTTGCACAA 1042
Query 725 ATATTCTGGTGTTTTGTATGGATTAGGTGTTGAGAATG 762
||||||||||||||||||||||||||||||||| ||||
Sbjct 1043 ATATTCTGGTGTTTTGTATGGATTAGGTGTTGAAAATG 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5