BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951675

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80620.1 | Symbols:  | S15/NS1, RNA-binding protein | chr1:3...   161    2e-39


> AT1G80620.1 | Symbols:  | S15/NS1, RNA-binding protein | chr1:30305362-30307417 
FORWARD LENGTH=1522
Length=1522

 Score =  161 bits (87),  Expect = 2e-39
 Identities = 140/163 (86%), Gaps = 14/163 (9%)
 Strand=Plus/Plus

Query  1    CCGCCAAGATCTCAGTTTCCATGGCGCTTCATCTCGCCAGACCTAAACAAAGGTTACATT  60
            |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  25   CCGCCAAGA--TCAGTTTCCATGGCGCTTCATCTCGCCAGACCAAAACAAAGGTTACATT  82

Query  61   CTAATCCATCTCTCATTCATCTTTTCTCAACCTCCTCATC---------ATC-TC-C-TC  108
            | ||||||||||||||||| ||||||||||||||||| ||         ||| || | ||
Sbjct  83   CGAATCCATCTCTCATTCACCTTTTCTCAACCTCCTCCTCCTCCTCCTCATCATCACCTC  142

Query  109  AAGACGGCAACGAATCTAGCGAGCAGCCCTCTCAATCACCGTC  151
            ||||||| ||||||||||  || ||||||||||||||| ||||
Sbjct  143  AAGACGGGAACGAATCTAATGAACAGCCCTCTCAATCATCGTC  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8400325617


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5