BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951679

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15290.1 | Symbols:  | 3-hydroxyacyl-CoA dehydrogenase famil...   861    0.0  


> AT3G15290.1 | Symbols:  | 3-hydroxyacyl-CoA dehydrogenase family 
protein | chr3:5144997-5146856 FORWARD LENGTH=1185
Length=1185

 Score =  861 bits (466),  Expect = 0.0
 Identities = 521/548 (95%), Gaps = 2/548 (0%)
 Strand=Plus/Plus

Query  1    TTCGAAGAAGCAGATAGAAAAATGGCGGAGATGAAGTGTGTCGGAGTAGTTGGTGCTGGA  60
            ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  37   TTCAAAGAAGCAGATAGAAAAATGGCGGAGATGAAGAGTGTCGGAGTAGTTGGTGCTGGA  96

Query  61   CAGATGGGTTCAGGAATCGCACAACTCGCCGCCACGAGTGGCCTCGATGTTTGGCTCATG  120
            || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  97   CAAATGGGTTCAGGAATCGCGCAACTCGCCGCCACGAGTGGCCTCGACGTTTGGCTCATG  156

Query  121  GACGCTGATCGAGATGCGCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGT  180
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  157  GACGCTGATCGAGATGCCCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGA  216

Query  181  TTCGTCTCCAAAGGTCTAATCTCCAAGGAAATTGGTGATGATGCTATGCATCGTCTACG-  239
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct  217  TTCGTCTCCAAAGGTCTAATCTCCAAGGAAGTTGGTGATGATGCTATGCATCGTCTACGA  276

Query  240  TGTAACATTGAATCTTGAAGATTTGTCTTCTGCTGATATCATTGTTGAAGCCATTGTGGA  299
            | |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  277  T-TAACATCGAATCTTGAAGATTTGTGTTCTGCTGATATCATCGTTGAAGCCATTGTGGA  335

Query  300  ATCAGAAGACATTAAGAAGAAACTGTTCAAGGATTTAGATGGTATAGCCAAGAGTTGTGC  359
            ||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||| |||
Sbjct  336  ATCAGAAGACATTAAGAAGAAGCTGTTTAAGGATCTAGATGGTATAGCTAAGAGTTCTGC  395

Query  360  GATTTTAGCTTCTAACACAAGTTCTATCTCCATTACTCGTCTTGCATCTGCAACGAAAAG  419
            ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct  396  GATTTTAGCTTCTAACACAAGTTCTATATCCATTACTCGTCTTGCATCTGCTACGAGAAG  455

Query  420  ACCAAGCCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGA  479
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  456  ACCCAGCCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGA  515

Query  480  GATCATTCGTGGTGCAGATACCTCAGAAGAGACGTTTATTGCTACGAAAGCTCTGGCTGA  539
             |||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct  516  AATCATTCGCGGTGCAGATACCTCAGAAGAGACGTTTCTTGCTACAAAAGTTCTGGCTGA  575

Query  540  AAGGTTTG  547
            ||||||||
Sbjct  576  AAGGTTTG  583



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5