BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951681
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09570.1 | Symbols: | Lung seven transmembrane receptor fam... 745 0.0
> AT3G09570.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr3:2940446-2942109 FORWARD LENGTH=1664
Length=1664
Score = 745 bits (403), Expect = 0.0
Identities = 429/442 (97%), Gaps = 0/442 (0%)
Strand=Plus/Plus
Query 487 GAGACTGGACCTTTTATTAAAGACTGGTTTACTTGGAATCAGATATTCTTGCTTGTAGAT 546
||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 976 GAGACTGGACCTTTTATCAAAGATTGGGTTACTTGGAATCAGATATTCTTGCTTGTAGAT 1035
Query 547 ATAGTTTGTTGTTGTGCAATCTTATTTCCTATTGTTTGGTCGATTCGTTCGCTAAGAGAG 606
|||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1036 ATAGTTTGCTGTTGTGCGATCTTATTCCCTATTGTTTGGTCGATACGTTCGCTAAGAGAG 1095
Query 607 ACTTCAAAAACCGATGGGAAAGCGGCTAGGAACTTGGCGAAATTGACTCTGTTTAGACAA 666
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 ACTTCGAAAACCGATGGGAAAGCGGCTAGGAACTTGGCGAAATTGACTCTGTTTAGACAA 1155
Query 667 TTCTACATTGTTGTCATCGGGTATTTGTACTTTACGAGGATTGTAGTGTTTGCGCTGAAG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 TTCTACATTGTTGTCATCGGGTATTTGTACTTTACGAGGATTGTAGTGTTTGCGCTGAAG 1215
Query 727 ACAATCGCAGCTTATAAGTATCGGTGGGTGAGCAATGCAGCTGAGGAGATTGCAAGTCTG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 ACAATCGCAGCTTATAAGTATCGGTGGGTGAGCAATGCAGCTGAGGAGATTGCAAGTCTG 1275
Query 787 GCGTTTTACATGTTGATGTTCTATATGTTCAGGCCGGTCGAGAAGAATGAGTATTTCGTT 846
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1276 GCGTTTTACATGTTGATGTTCTATATGTTCAGGCCTGTCGAGAAGAATGAGTATTTCGTT 1335
Query 847 TTAGATGAAGAAGAAGAAGAAGCCGCAGAGCTGGCCTTGAAGGAGGATGATTTTGAACTC 906
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1336 ATAGATGAAGAAGAAGAAGAAGCCGCCGAGCTGGCCTTGAAGGAGGATGATTTTGAACTC 1395
Query 907 TGAAACAGATCAAGGACTTTCA 928
|||| ||||||||||| |||||
Sbjct 1396 TGAAGCAGATCAAGGAATTTCA 1417
Score = 721 bits (390), Expect = 0.0
Identities = 457/489 (93%), Gaps = 5/489 (1%)
Strand=Plus/Plus
Query 1 CTCTACTGTTACGGCATGAAAATGACGAGACTACCCCTCTTCGTCGTCCTCCTACTCTTC 60
|||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 58 CTCTACAGTTACGGCGCGAATATGACGAGACTACCCCTCTTCGTCGTCCTCCTCCTCTTC 117
Query 61 ACCGCAAGTTTCATCACTC-CTACGGCGGCGGAGATCAAGTCTCTCACAATTTCCGACGA 119
||||||||| |||||||| | ||||||||||||||||| ||||||||||| ||||||||
Sbjct 118 TCCGCAAGTTGCATCACTCGC-ACGGCGGCGGAGATCAAATCTCTCACAATCTCCGACGA 176
Query 120 TTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGTCATGTTAGCGT 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 177 TTCTAGGCCGATGATTCTCTTCGAAAAGTTCGGATTCACTCAGTCCGGCCATGTTAGCGT 236
Query 180 CTCTGTTTCCTCTGTATCAGTAGTATCTTCTTCGTCTGTTCCGATCCCAGATCCGTCGAG 239
|||| ||||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 237 CTCTATTTCCTCTGTAGCAGTAGTATCTTCTTCGTCTGATCCGATCCCGGATCCATCGAG 296
Query 240 GCTAGGGTTCTTCCTTATGTCCGAGGAATCGCTTCTCCAGGTAGTCTTAGAGATCGAGCA 299
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTTAGGGTTCTTCCTTATGTCAGAGGAATCGCTTCTCCAGGTAGTCTTAGAGATCGAGCA 356
Query 300 AAAGCCTAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCACATTAAAAGA 359
||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 357 AAACCCCAACTTCTGTGTACTCGATTCCAATTACGTCCTCCATCTCTTCACATTTCACGA 416
Query 360 TCTCTCTTCTCCTCCTGGTTCCCAAATACGAGCACTTGTACCCGGTGATTTCTCCGAACG 419
||||||| |||| ||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 417 TCTCTCTCCTCCCCCTGGTTCC-AAATACGAGCACTTGTATCCGGTGATGTCTCCGAACG 475
Query 420 AATACTCTCTCTTCTTCGTGAATTGCGTTAC-GGAAACCAAAATTTCGATGAAGGTTCGA 478
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 476 AATACTCTCTCTTCTTCGTGAATTGCGT-ACCGGAAACCAAAATTTCGATGAAGGTTCGA 534
Query 479 CCGGAGATG 487
||||||||
Sbjct 535 ACGGAGATG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5