BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951686

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35615.1 | Symbols:  | Eukaryotic aspartyl protease family p...   449    7e-126


> AT2G35615.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr2:14959391-14960734 FORWARD LENGTH=1344
Length=1344

 Score =  449 bits (243),  Expect = 7e-126
 Identities = 316/350 (90%), Gaps = 10/350 (3%)
 Strand=Plus/Plus

Query  28   CCCCTGTTTCTTTCCCCGTTAAC-GTTTTCGGTTGTGGCTACAACAACGGAGGTACCTTC  86
            ||||||||||||| || | | || || ||||||||||||||||| ||||| |||||||||
Sbjct  572  CCCCTGTTTCTTTTCCTGGT-ACTGTCTTCGGTTGTGGCTACAATAACGGTGGTACCTTC  630

Query  87   GACGAAACTGGTTCTGGGATCATCGGTCCT-GGTGGCT-GTCAGTTATCACTAATCTTCC  144
            ||||| |||||||||||||| |||||| || ||||| | |||| ||||||||||||| ||
Sbjct  631  GACGAGACTGGTTCTGGGATTATCGGT-CTAGGTGG-TGGTCATTTATCACTAATCTCCC  688

Query  145  AGCTCAGTTCGTCGATTTCGAAGAAATTCTCTTATTGCTTGTCTCACAAGTCAGCTACCA  204
            ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  689  AGCTCGGTTCGTCGATTTCGAAGAAATTTTCTTATTGCTTGTCTCACAAGTCAGCTACCA  748

Query  205  CGAATGGCACAAGCGTCATAAACCTAGGCACCAGCTCGATTCCTTCAAGTCTAAGCAAAG  264
            ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct  749  CGAATGGCACAAGCGTCATAAACCTAGGCACTAACTCGATTCCTTCAAGTCTAAGCAAAG  808

Query  265  GCTCCTGTGTGATATCGACTCCATTGGTCGATAAAGAGCCTCGTACTCACTACTACTTGA  324
             |||| | ||| |||| ||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct  809  ACTCCGGCGTGGTATCAACTCCGTTGGTCGATAAAGAGCCTCTTACTTACTACTACTTGA  868

Query  325  CGCT-GAAAGCCCA-CTCCGACGGGAAGAAAAAGATTCCGTACACCGGAA  372
            |||| ||| ||| | ||||| |||||||||||||||||| ||||||||||
Sbjct  869  CGCTTGAA-GCC-ATCTCCGTCGGGAAGAAAAAGATTCCTTACACCGGAA  916



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18900673624


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5