BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951689
Length=412
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01100.2 | Symbols: ADNT1 | adenine nucleotide transporter 1... 453 6e-127
> AT4G01100.2 | Symbols: ADNT1 | adenine nucleotide transporter
1 | chr4:477141-479634 FORWARD LENGTH=1415
Length=1415
Score = 453 bits (245), Expect = 6e-127
Identities = 270/282 (96%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 1 TGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGCTTCCGCTGTTGTTACAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1110 TGTGATTCGTAGGAGAATGCAAATGGTCGGGTGGAAAGATGCTTCCGCTATTGTAACAGG 1169
Query 61 CGAAGGGAGAAGCAAAGCTTTGCTTGAATACACTGGTATGATGGATGCATTTAGAAAAAC 120
|||||||||||||| ||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 1170 CGAAGGGAGAAGCACAGCTTCACTTGAATACACTGGTATGGTCGATGCATTTAGAAAAAC 1229
Query 121 AGTTCGTCATGAAGGCTTCGGAGCATTGTACAAGGGTTTGGTCCCCAATTCAGTGAAGGT 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AGTTCGTCATGAAGGCTTTGGAGCATTGTACAAGGGTTTGGTCCCCAATTCAGTGAAGGT 1289
Query 181 TGTACCATCCATTGCGATTGCATTTGTGACATATGAGATGGTGAAAGAAGTTTTAGGAGT 240
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1290 TGTACCATCGATTGCGATTGCATTTGTGACATATGAGATGGTGAAAGACGTTTTAGGAGT 1349
Query 241 GGAGTTTAGGATATCAGACTGAGTCACATTTGATATCTCAAT 282
|||||||||||||||||||||||||| ||||||||||||||
Sbjct 1350 GGAGTTTAGGATATCAGACTGAGTCA--TTTGATATCTCAAT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19503886612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5