BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951695

Length=992
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19520.1 | Symbols:  | Protein of unknown function (DUF626) ...   141    1e-32


> AT3G19520.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr3:6772687-6774445 FORWARD LENGTH=1261
Length=1261

 Score =  141 bits (76),  Expect = 1e-32
 Identities = 250/327 (76%), Gaps = 40/327 (12%)
 Strand=Plus/Plus

Query  550  AAACGATTTTACATGGTTG-AGGAATCCGAGTTGCAAGACACTGATTGGATCCGTCTATA  608
            |||||||||||||||| || || ||| ||||||||||  || ||||||||||||||||||
Sbjct  621  AAACGATTTTACATGG-TGAAGAAATGCGAGTTGCAATCCAATGATTGGATCCGTCTATA  679

Query  609  TTTGGAACTTGTCCTTTGTTCAAAGG-AT-AGGCGG-CT-CAGAGCCAGCGACCTGTCCA  664
            ||||||||||| |  ||| |  | |  || || | | || |||||  || || |||||||
Sbjct  680  TTTGGAACTTG-CAGTTGGTGTACGTTATCAG-CAGACTTCAGAG--AGTGATCTGTCCA  735

Query  665  TGTTGAAGATTGTGAAAGTGGCGGTAGAAACTA-GTGATGAAGATGTGGAGCCGCCGAAT  723
             |||| || || ||||||||||  ||||||||| | || ||||||||| |||| ||||||
Sbjct  736  AGTTGCAGGTTCTGAAAGTGGCAATAGAAACTAAG-GAAGAAGATGTGCAGCCACCGAAT  794

Query  724  GAG-AGACTCAACG-CGAAAAC-CG-CAAGTTTCTACATAACTTTTCA---CTTGGCCA-  775
             || |||||||| | | ||||  |  || ||  ||||||||| ||| |   |||||||| 
Sbjct  795  -AGGAGACTCAA-GTCCAAAAGTCTACATGT--CTACATAACGTTTAAGGGCTTGGCCAA  850

Query  776  ---T--T-T-GG-G--G-GATTAGG-GAGGATGTTGAACGCAGAGCTATAGTTAGAAGAG  823
               |  | | || |  | |||| || ||| |||||||||||| |||||||||| ||||||
Sbjct  851  GGCTCCTATTGGTGATGAGATT-GGTGAGCATGTTGAACGCAAAGCTATAGTTCGAAGAG  909

Query  824  TCCTT--TCA-CGTACAGGAAACTTGA  847
            || ||  | | ||| ||||| ||||||
Sbjct  910  TCATTGATGAGCGTTCAGGACACTTGA  936



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48576420149


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5