BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951699
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36026.1 | Symbols: | Ovate family protein | chr2:15127265-... 872 0.0
AT2G36030.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 324 7e-88
> AT2G36026.1 | Symbols: | Ovate family protein | chr2:15127265-15127816
FORWARD LENGTH=552
Length=552
Score = 872 bits (472), Expect = 0.0
Identities = 528/555 (95%), Gaps = 3/555 (1%)
Strand=Plus/Plus
Query 21 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGACAGGCAAAAGCAAGAAGAAGAAGATGGTCCTTAAGGCAGTCTCTGTCGTAGAC 60
Query 81 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTACCCCAAAA 140
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 61 ATCGGCTGTGGCAACTGTAAGTTCCCAAGCTTGTCTTCTTTTTTCAACCCTTCCCCCAAA 120
Query 141 AAGCCCCGCCTCTACTCCTCTAATTACGgccactgccactcctccacccccaccacggcc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCCCCGCCTCTACTCCTCTAATTACGGCCACTGCCACTCCTCCACCCCCACCACGGCC 180
Query 201 tcctcctcctccgccgttccctccacctcccactggttctctgacaattcttcctcctcc 260
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TCCTCTTCCTCCGCCGTTCCCTCCACCTCCCACTGGTTCTCTGACACCTCTTCCTCCTCG 240
Query 261 GCAACACCTTCCACCGCCGCTGTCGCCGTCGAGAAAGATTCCGACGACCCTTACCTTGAT 320
|||||||| ||| ||||||||||||||||||||||||| || ||||| |||||||| |||
Sbjct 241 GCAACACCCTCCGCCGCCGCTGTCGCCGTCGAGAAAGACTCAGACGATCCTTACCTAGAT 300
Query 321 TTCCGACAGTCTATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTT 380
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCGACAGTCCATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGATCTC 360
Query 381 AGAGAGCTTCTCCACTGTTTCCTATCCCTTAACGAGCCCTACCACCACGGCATCATCATC 440
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 361 AGAGAGCTTCTCCACTGCTTCCTCTCCCTTAACGAGCCATACCACCACGGCATCATCATC 420
Query 441 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCCGCCGTCAAACACCGTGGCGAC 500
|||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||
Sbjct 421 CGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCTGCC---AAACGCCGTGGAGAC 477
Query 501 GTCCAAGAGTCACCACTCGTCCACCGTCATGGCTCACGTGCCTCGCACCGTAACCACTAC 560
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 478 GTCCAAGAGTCTCCACTCGTCCACCGTCATGGCTCACGTGCGTCACACCGTAACCACTAC 537
Query 561 CACCGATCGAAGTAA 575
||||| |||||||||
Sbjct 538 CACCGCTCGAAGTAA 552
> AT2G36030.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:15127559-15127771 REVERSE LENGTH=213
Length=213
Score = 324 bits (175), Expect = 7e-88
Identities = 201/213 (94%), Gaps = 3/213 (1%)
Strand=Plus/Minus
Query 318 GATTTCCGACAGTCTATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGAT 377
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GATTTCCGACAGTCCATGCTTCAGATGATTCTCGAGAACGAGATTTACTCCAAAAACGAT 151
Query 378 CTTAGAGAGCTTCTCCACTGTTTCCTATCCCTTAACGAGCCCTACCACCACGGCATCATC 437
|| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 150 CTCAGAGAGCTTCTCCACTGCTTCCTCTCCCTTAACGAGCCATACCACCACGGCATCATC 91
Query 438 ATCCGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCCGCCGTCAAACACCGTGGC 497
||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 90 ATCCGCGCTTTCTCCGAAATCTGGGACGGAGTTTTCTCCGCTGCC---AAACGCCGTGGA 34
Query 498 GACGTCCAAGAGTCACCACTCGTCCACCGTCAT 530
|||||||||||||| ||||||||||||||||||
Sbjct 33 GACGTCCAAGAGTCTCCACTCGTCCACCGTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28834400378
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5