BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951700
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 1085 0.0
AT5G54064.2 | Symbols: | pseudogene, similar to putative recep... 388 3e-107
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 1085 bits (587), Expect = 0.0
Identities = 689/738 (93%), Gaps = 7/738 (1%)
Strand=Plus/Plus
Query 1 Atctttgttcttcctcctctatgtctaatccattcttcttccttt-cctttgtcctcctc 59
|||||| |||||||||||||||||||||| || |||| ||||||| ||||| ||||| ||
Sbjct 26 ATCTTTCTTCTTCCTCCTCTATGTCTAATTCAATCTTGTTCCTTTCCCTTT-TCCTCTTC 84
Query 60 cttccttttGTTGTTGATTCACTTTACTTCAATTTTACTAGTTTTCGGGC-AGGTGATCC 118
|| ||||||||||||||||||||||||||||| ||||| ||||||| | | |||||||||
Sbjct 85 CTCCCTTTTGTTGTTGATTCACTTTACTTCAACTTTACAAGTTTTC-GACAAGGTGATCC 143
Query 119 CGAGAACATAGTATACCATGGGGATGCAACGCCTGATGAAGATGGAACGGTGAACTTCAA 178
|| | ||||| | ||||| ||||||||||| || |||||||||||||| |||||||||||
Sbjct 144 CGGGGACATATTTTACCACGGGGATGCAACTCCCGATGAAGATGGAACAGTGAACTTCAA 203
Query 179 CAACGCTGAACAAACATCTCAGGTTGGTTGGATTACTTATTCCAAGAAGGTGCCTATATG 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 204 CAACGCTGAACAAACATCTCAGGTTGGTTGGATTACTTATTCAAAGAAGGTGCCTATATG 263
Query 239 GAGTCATAGGACTGGTAAGGCTTCAAATTTTAACACCAGTTTCTCCTTCAAAATCGATGC 298
|||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 264 GAGTCATAAAACTGGTAAGGCTTCAGATTTCAGCACCAGTTTCTCCTTCAAAATCGATGC 323
Query 299 TCGTAACCTTTCAGCAGATGGTCATGGAATCTGTTTCTTTCTTGCTCCTATGGGAGCTCA 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCGTAATCTTTCAGCAGATGGTCATGGAATCTGTTTCTTTCTTGCTCCTATGGGAGCTCA 383
Query 359 ACTACCTGCATACTCAGTTGGTGGTTTCTTGAATTTGTTCACTCGAAAGAATAATTACTC 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 384 ACTACCTGCATACTCAGTTGGTGGTTTCTTGAATTTGTTCACTCGGAAGAATAATTACTC 443
Query 419 GTCTTCGTTTCCGCTTGTTCATGTCGAATTTGACACATTCAACAATCCAGGATGGGATCC 478
|||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 444 ATCTTCGTTTCCGCTAGTTCATGTTGAATTTGACACGTTTAACAATCCAGGATGGGATCC 503
Query 479 TAAGGATGTTGGATCTCATGTCGGGATCAATGACAACTCTCTTGTTTCTTCCAACTACAC 538
||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 504 TAATGATGTTGGATCTCATGTTGGGATCAATAACAACTCTCTTGTTTCTTCCAACTACAC 563
Query 539 TTCTTGGAATGCAAGCTCACACAACCAAGATATTGGTCATGCAAAGATCTCTTATGATTC 598
|||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||
Sbjct 564 TTCTTGGAATGCAAGCTCTCACAGCCAAGATATTTGTCATGCAAAGATCTCTTATGATTC 623
Query 599 TGTGACTAAGAATTTAAGTGTGACTTGGGCTTATGAGCTAACA--A-CCTCTGATCCTAA 655
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 624 CGTGACCAAGAATTTAAGTGTGACTTGGGCTTATGAGCTAACAGCAACCTCTGATCCTAA 683
Query 656 GGAAAGTTCAAGCCTTTCTTACATCATCGACCTCACAAAGGTTCTGCCATCAGAAGTTAT 715
||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 684 GGAGAGTTCAAGCCTTTCTTACATCATCGACCTCGCTAAGGTTCTGCCATCAGATGTTAT 743
Query 716 GTTCGGGTTTATAGCTGC 733
||||||||||||||||||
Sbjct 744 GTTCGGGTTTATAGCTGC 761
> AT5G54064.2 | Symbols: | pseudogene, similar to putative receptor
protein kinase-like protein, blastp match of 39% identity
and 1.2e-53 P-value to GP|15289871|dbj|BAB63567.1||AP003224
putative receptor protein kinase-like protein {Oryza sativa
(japonica cultivar-group)} | chr5:21940180-21941679 FORWARD
LENGTH=1500
Length=1500
Score = 388 bits (210), Expect = 3e-107
Identities = 425/528 (80%), Gaps = 18/528 (3%)
Strand=Plus/Plus
Query 206 TTGGATTACTTATTCCAAGAAGGTGCCTATATGGAGTCATAGGACTGGTAAGGCTTCAAA 265
|||| |||||||| | |||| |||||| | |||| || || ||||||||| || || |
Sbjct 292 TTGGGTTACTTATGCTGAGAAAGTGCCTCTCTGGAATCCTAAAACTGGTAAGCCTACAGA 351
Query 266 TTTTAACACCAGTTTCTCCTTCAAAATCGATGCTCGTAACCTTTCAGCA-GATGGTCATG 324
||||| |||||||||||||| || || ||| | |||||||||| || | | |||||||
Sbjct 352 TTTTAGTACCAGTTTCTCCTTTAAGATTGATACCCGTAACCTTT-AGAATTACGGTCATG 410
Query 325 GAATCTGTTTCTTTCTTGCTCCTATG-GGAGCTCAACTACCTG-CATACTCAGTTGGTGG 382
| ||||| ||||||||||||||| || ||| |||||| |||| | |||||| |||||
Sbjct 411 GGATCTGCTTCTTTCTTGCTCCTTTGCGGA-TTCAACTTCCTGTGA-ACTCAGCTGGTGA 468
Query 383 TTTCTTGAAT-TTGTTCACTCGAA-AGAATAATTACTCGTCTTCGTTTCCGCTTGTTCAT 440
||||||| | || || |||||| | | | ||| | |||||||||||||| ||||||
Sbjct 469 TTTCTTGGGTCTTTTTTTCTCGAATCG-AGAGCTACGCATCTTCGTTTCCGCTGGTTCAT 527
Query 441 GTCGAATTTGACACATTCAACAATCC-AGGATGGGATCCTAAGGA-TGTTGGATCTCATG 498
|||| |||||| ||||||| || || || |||||||||| | | ||||||||||||||
Sbjct 528 ATCGAGTTTGACTCATTCAATAA-CCAAGAATGGGATCCT-ACCACTGTTGGATCTCATG 585
Query 499 TCGGG-ATCAATGACAACTCTCTTGTTTCTTCCAACTACACTTCTTGGAATGCAAGCTCA 557
| ||| |||||| | |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 586 T-GGGAATCAATAATAACTCTCTTGTTTCGTCTAACTACACTTCTTGGAATGCAAGCTCA 644
Query 558 CACAACCAAGATATTGGTCATGCAAAGATCTCTTATGATTCTGTGACTAAGAATTTAAGT 617
|| | ||||||| ||||||||||| | ||||| ||||| ||||| ||||||||||| |||
Sbjct 645 CATATCCAAGATGTTGGTCATGCACATATCTCCTATGACTCTGTTACTAAGAATTTGAGT 704
Query 618 GTGACTTGGGCTTATGAGCTAACAACCTCTGATCCTAAGGAAAGTTCAAGCCTTTCTTAC 677
| | ||||||||||||| |||| | ||||||||| |||| |||| | || |||| ||
Sbjct 705 GCGTCTTGGGCTTATGAATTAAC--C-TCTGATCCTCAGGAGAGTTTAGGCATTTCCTAT 761
Query 678 ATCATCGACCTCACAAAGGTTCTGCCATCAGAAGTTATGTTCGGGTTT 725
||||| || || |||||||| ||||| || | |||| | ||||||||
Sbjct 762 ATCATTGATCTTGCAAAGGTTTTGCCACCACATGTTACGGTCGGGTTT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5