BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951710

Length=412
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21520.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   521    2e-147


> AT4G21520.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:11447434-11450443 REVERSE LENGTH=1424
Length=1424

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 296/303 (98%), Gaps = 0/303 (0%)
 Strand=Plus/Plus

Query  2    AGAAGCTCTGACGAAGAAGATGGGTGAAGAAGAAGCAGTAGCCGAAGAAAATGGTGGACT  61
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  48   AGAAGCTCTGACGAAGAAGATGGGTGAAGAAGAAGCAGTAGCAGAAGAAAATGGTGGACT  107

Query  62   TAAGGTAGAATCAGGAGAACAAAACTCATCCTGGCGTACTATGAGATTTGATGTCTCTCC  121
            |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct  108  TAAGGTAGAATCAGGAGAACAAAAATCATCCTGGCCTACTATGAGATTTGATGTCTCTCC  167

Query  122  TTATAGAACGCACCATTTCTCTAAGCAGTTCAGGACCGCTCGAAACCCTTATAATTTCCT  181
            |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct  168  TTATAGAACGCACCATTTCTCTAAGCAGTTCAGGACAGCTCGAAACCCTAATAATTTCCT  227

Query  182  CAAGGGTCTTAAATGGTCACCTGATGGTTCATGTTTCCTTGCAAGCTCTGAGGATAATAC  241
            |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  228  CAAGGGTCTTAAGTGGTCACCTGATGGTTCATGTTTCCTTGCAAGCTCTGAAGATAATAC  287

Query  242  ACTTAGTCTGTTTCATCTGCCACAAGATGGAGGGGATTCTAATGGCTATGGAGTGCCAGT  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  288  ACTTAGTCTGTTTCATCTGCCACAAGATGGAGGGGATTCTAATGGCTATGGAGTGCCAGT  347

Query  302  CCC  304
            |||
Sbjct  348  CCC  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19503886612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5