BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951726
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31580.1 | Symbols: | tRNAHis guanylyltransferase | chr2:13... 1692 0.0
AT2G32320.2 | Symbols: | tRNAHis guanylyltransferase | chr2:13... 1587 0.0
> AT2G31580.1 | Symbols: | tRNAHis guanylyltransferase | chr2:13440909-13445851
REVERSE LENGTH=1946
Length=1946
Score = 1692 bits (916), Expect = 0.0
Identities = 1378/1598 (86%), Gaps = 44/1598 (3%)
Strand=Plus/Plus
Query 19 ATATGGCGAATAGTAAGTACGAGTACGTGAAGTCATTCGAAGTGGAAGACGAAGTTATGT 78
||||||||||||| || |||||||| ||||| ||||||||| |||| || ||||| |||
Sbjct 154 ATATGGCGAATAGCAAATACGAGTATGTGAAATCATTCGAATTGGAGGATGAAGTCATGC 213
Query 79 TTCCCAATTTGATAATTATCCGTATCGATGGCCGTGATTTTTCGAGATTTTCCCAAGTTC 138
|||| || ||||| || | || |||||||| ||||||||||| |||||||| |||||||
Sbjct 214 TTCCTAACTTGATGGTTGTTCGAATCGATGGTCGTGATTTTTCTAGATTTTCTCAAGTTC 273
Query 139 ACAAGTTTGAGAAGCCTAATGATGAGACGGCTCTAAATTTGATGAATTCATGTGCATCTT 198
| |||||||||||||||||||||| || || || |||||||||||||||||| || ||
Sbjct 274 ATGAGTTTGAGAAGCCTAATGATGAAACAGCCCTCAATTTGATGAATTCATGTTCAGCTG 333
Query 199 CGGTTTTGGAAGAGTATCCTGATATAGTCTTTGCATATGGATATAGTGACGAGTACAGCT 258
||||||||||||||| |||||| ||| ||||||| |||||||| |||||||| |||||||
Sbjct 334 CGGTTTTGGAAGAGTTTCCTGACATAATCTTTGCTTATGGATACAGTGACGAATACAGCT 393
Query 259 TTGTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGGTTTTATCTTTGG 318
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 394 TTGTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGATTTTGTCGTTGG 453
Query 319 TAGCCTCATTT-TTTGCTGCGGTCTATGTAACGAAATGGAAAGAGTTCTTTCCTCATAGA 377
|||| || ||| |||||||| || |||||||| |||||||||||||| ||||| || |||
Sbjct 454 TAGCTTC-TTTCTTTGCTGCAGTTTATGTAACAAAATGGAAAGAGTTTTTTCCCCAAAGA 512
Query 378 AAATTAGTATATGCTCCTTCATTC-GCTTCAAAAGCTGTAAGTTGCGCATCAATAGAGGT 436
|||||| |||||||||| || ||| | |||||||| ||||||||| |||||| ||||||
Sbjct 513 AAATTATTATATGCTCCGTCCTTCAG-TTCAAAAGTTGTAAGTTGTGCATCAGCAGAGGT 571
Query 437 TCTTCAAGCTTACCTTGCTTGGAGACAACATGACTGCCACATCGGTAATCAGTATGACAC 496
|||||| ||||| || || ||||||||||| ||||||||| | ||||||||||||||
Sbjct 572 TCTTCAGGCTTATCTCGCGTGGAGACAACAGGACTGCCACGCCAACAATCAGTATGACAC 631
Query 497 ATGTTTTTGGATGTTAGTAAAAAGTGGAAAGACCTTAAGTGAAACACAGGAGATTTTGAA 556
||||| ||||||||||| ||||||||||||| | |||||||||| || |||||| | ||
Sbjct 632 TTGTTTCTGGATGTTAGTTAAAAGTGGAAAGAGCGTAAGTGAAACCCAAGAGATTCTAAA 691
Query 557 GGATACACAGAAACAACAGAGAAATGAGCTTCT-TTTCCAGCAATTTGGTATTAATTATA 615
||||||||| ||||| |||| |||||||||||| ||| ||| |||||||||| ||||| |
Sbjct 692 GGATACACAAAAACAGCAGAAAAATGAGCTTCTCTTT-CAGAAATTTGGTATCAATTACA 750
Query 616 AAATGCTTCCTGTATTGTTTCGCCAAGGATCATGCCTTTTTAAGACAAAGGTGGAAGAAA 675
| | |||||||| |||||||||||||||||| || ||||| |||| ||||||||||||||
Sbjct 751 AGACGCTTCCTGAATTGTTTCGCCAAGGATCTTGTCTTTTCAAGAAAAAGGTGGAAGAAA 810
Query 676 CTGTAAAGCATGATGAGAATGGAAATCCTGTAAAACGATTGAGGAGAAGGGAAACTTTAG 735
||||||||||||| || ||||| |||||||||||| |||||||||||| || ||| |
Sbjct 811 CTGTAAAGCATGACGAAAATGGCAATCCTGTAAAAAGATTGAGGAGAAAGGCTGTTTTTG 870
Query 736 TGCATTCAGAAAATATTGCTGGAAGAAGCTTTTGGAATGAGCA-CTCCTCTCT-TCATAA 793
| |||||||| |||||||| ||||||||||||||||||||||| | ||||||| | ||||
Sbjct 871 TACATTCAGAGAATATTGCAGGAAGAAGCTTTTGGAATGAGCAGC-CCTCTCTAT-ATAA 928
Query 794 AGATCTTGGACATTTTGCAAAAGACATTGGCAAAATTGAACCAGATTATGTTAAGTCGTT 853
|||||||| || || | ||||||||||| |||||||||||||||| | ||| ||||||
Sbjct 929 TGATCTTGGCCACTTCACGAAAGACATTGGAAAAATTGAACCAGATTTTATTAGGTCGTT 988
Query 854 TCAGTTTGAGAGTAGATTATTACCTTTAACTTGGGTTGTGGTTAGGATTGATGGCTGCCA 913
||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 989 TCAGTTTGAGAACAAATTGTTACCTTTAACTTGGGTCGTGGTTAGGATTGATGGCTGTCA 1048
Query 914 TTTTCACAGATTTTCTGAAGTTCACGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAA 973
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1049 CTTTCACAGATTTTCTGACGTTCATGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAA 1108
Query 974 ACTTATGAATTCATGTGCAGTGGCTGTTCTTGAAGAGTTTCAGGATATTGTCTTTGCCTA 1033
|||||||||||||||||||||||||||||| || |||||| |||||||| |||||||||
Sbjct 1109 ACTTATGAATTCATGTGCAGTGGCTGTTCTCGAGGAGTTTGAGGATATTCACTTTGCCTA 1168
Query 1034 CGGCGTTAGTGACGAGTACAGCTTTGTTCTT-AAGAATA-AATCTGAGCTTTACAAAAGA 1091
|| || ||||| ||||| ||||||||| || ||||| | |||||||||| |||||||||
Sbjct 1169 TGGTGTCAGTGATGAGTATAGCTTTGTT-TTGAAGAA-AGAATCTGAGCTCTACAAAAGA 1226
Query 1092 CAGTCCAGTAAGATAATATCTGCAATTGTATCCTTCTTCACATCGACGTACGTGATGAGA 1151
|| ||||||||||||||||||||| | | ||||||||| ||||| || || ||| | | |
Sbjct 1227 CAATCCAGTAAGATAATATCTGCAGTCGCATCCTTCTTTACATCCACATATGTGTT-ACA 1285
Query 1152 -TGGGGAGA-TTTCTTCCCTCACAAAAAATTGAAATACCCTCCATCATTCGATGGACGAG 1209
|||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1286 ATGGGGAGAATTT-TTCCCTCACAAAGAATTGAAGTACCCTCCATCATTCGATGGACGAG 1344
Query 1210 CTGTTTGCTATCCAACAT-CAGATATTCTCCTGGATTATCTAGCTTGGAGACAAGTCGAC 1268
|||| ||||||||||||| || |||||||| |||||||||| || ||||||||||| |||
Sbjct 1345 CTGTATGCTATCCAACATACA-ATATTCTCTTGGATTATCTGGCGTGGAGACAAGTTGAC 1403
Query 1269 TGCCACATCAATAATCAGTATAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAAGC 1328
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1404 TGCCACATCAATAATCAGTACAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAAAC 1463
Query 1329 AAAACTCAAGCCCAAGATTACTTAAAGGGTACCCAAACACGAGaaaaaaaCGAGTTACTT 1388
||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||| | |||
Sbjct 1464 AAAACTCAATCCCAAGATTACTTAAAGGGTACACAAACACGAGAGAAAAATGAGCTGCTT 1523
Query 1389 ATCCAG-CAATTTGGAATTGAGTACAATTCATTACCTGTAATCTTCCGCCTGGGGTCTTC 1447
| || | |||||||||||||||||||| ||||||||||||||||| || |||| |||||
Sbjct 1524 AGCC-GTCAATTTGGAATTGAGTACAACTCATTACCTGTAATCTTTCGAATGGGTTCTTC 1582
Query 1448 CGTTTTCCGCCTAAAGACGCAGGAAGGTGTTGCAGAGGAGAATGGAGAAGTTTCAGGAAA 1507
|||||||| |||||| | | | | || ||| | ||||| ||||||||| ||
Sbjct 1583 GGTTTTCCGTCTAAAG--G-A--A-GCTG----AGA--A---TGGAGTAGTTTCAGGGAA 1627
Query 1508 GCAAGTGGAAGCAGAAGTGGTTGTAGA-CTACT-CTAACATTATCGACCAATGTTTCTGG 1565
| || |||||| ||||||||| || || | | | | ||||| ||||| | |||||||||
Sbjct 1628 GAAACTGGAAGGAGAAGTGGTCGTGGATC-ATTGC-AACATCATCGAACGCTGTTTCTGG 1685
Query 1566 CAACAACATCCT-CACATTCTTAGCTGCTCCTAACACA 1602
|| |||| ||| ||||||||||||| ||| ||| |||
Sbjct 1686 GAAGAACA-CCTACACATTCTTAGCTACTCATAA-ACA 1721
> AT2G32320.2 | Symbols: | tRNAHis guanylyltransferase | chr2:13726819-13731767
FORWARD LENGTH=2165
Length=2165
Score = 1587 bits (859), Expect = 0.0
Identities = 922/953 (97%), Gaps = 2/953 (0%)
Strand=Plus/Plus
Query 667 TGGAAGAAACTGTAAAGCATGATGAGAATGGAAATCCTGTAAAACGATTGAGGAGAAGGG 726
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 895 TGGAAGAAACTGTAAAGCATGATGAGAATGGAAAGCCTGTAAAACGATTGAGGAGAAGAG 954
Query 727 AAACTTTAGTGCATTCAGAAAATATTGCTGGAAGAAGCTTTTGGAATGAGCACTCCTCTC 786
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 955 AAACTTTAGTGCATTCAGAAAATGTTGCTGGAAGAAGCTTTTGGAATGAGCACTCCTCTC 1014
Query 787 TTCATAAAGATCTTGGACATTTTGCAAAAGACATTGGCAAAATTGAACCAGATTATGTTA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TTCATAAAGATCTTGGACATTTTGCAAAAGACATTGGCAAAATTGAACCAGATTATGTTA 1074
Query 847 AGTCGTTTCAGTTTGAGAGTAGATTATTACCTTTAACTTGGGTTGTGGTTAGGATTGATG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AGTCGTTTCAGTTTGAGAGTAGATTATTACCTTTAACTTGGGTTGTGGTTAGGATTGATG 1134
Query 907 GCTGCCATTTTCACAGATTTTCTGAAGTTCACGAATTTGAGAAGCCAAATGATGAGCAAG 966
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1135 GCTGCCATTTTCACAGATTTTCTGAAGTTCATGAATTTGAGAAGCCAAATGATGAGCAAG 1194
Query 967 CTCTGAAACTTATGAATTCATGTGCAGTGGCTGTTCTTGAAGAGTTTCAGGATATTGTCT 1026
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1195 CTCTGAAACTTATGAATTCATGTGCAGTGGCTGTTCTTGAGGAGTTTCAGGATATTGCCT 1254
Query 1027 TTGCCTACGGCGTTAGTGACGAGTACAGCTTTGTTCTTAAGAATAAATCTGAGCTTTACA 1086
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1255 TTGCCTACGGCGTTAGTGATGAGTTCAGCTTTGTTCTTAAGAATAAATCTGAGCTTTACA 1314
Query 1087 AAAGACAGTCCAGTAAGATAATATCTGCAATTGTATCCTTCTTCACATCGACGTACGTGA 1146
||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||
Sbjct 1315 AAAGACAGTCCAGTAAGATAATATCTGCAGTAGTATCCTTCTTCACATCGACTTACATGA 1374
Query 1147 TGAGATGGGGAGATTTCTTCCCTCACAAAAAATTGAAATACCCTCCATCATTCGATGGAC 1206
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1375 TGAGATGGGGAGATTTTTTCCCTCACAAAAAATTGAAGTACCCTCCATCATTCGATGGAC 1434
Query 1207 GAGCTGTTTGCTATCCAACATCAGATATTCTCCTGGATTATCTAGCTTGGAGACAAGTCG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GAGCTGTTTGCTATCCAACATCAGATATTCTCCTGGATTATCTAGCTTGGAGACAAGTCG 1494
Query 1267 ACTGCCACATCAATAATCAGTATAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAA 1326
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 ACTGCCATATCAACAATCAGTATAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAA 1554
Query 1327 GCAAAACTCAAGCCCAAGATTACTTAAAGGGTACCCAAACACGAGaaaaaaaCGAGTTAC 1386
|||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1555 GCAAAATTCAAGCCCAGGATTACTTAAAGGGTACCCAGACACGAGAAAAAAACGAGTTAC 1614
Query 1387 TTATCCAGCAATTTGGAATTGAGTACAATTCATTACCTGTAATCTTCCGCCTGGGGTCTT 1446
||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1615 TTAGCCAGCAATTTGGAATTGAGTACAATTCATTACCTGTAATCTTCCGCATGGGTTCTT 1674
Query 1447 CCGTTTTCCGCCTAAAGACGCAGGAAGGTGTTGCAGAGGAGAATGGAGAAGTTTCAGGAA 1506
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1675 CCGTTTTCCGCCTAAAGACGCAGGAAGGTGTTACAGAGGAGAATGGAGAAGTTTCAGGAA 1734
Query 1507 AGCAAGTGGAAGCAGAAGTGGTTGTAGACTACTCTAACATTATCGACCAATGTTTCTGGC 1566
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1735 AGCAAGTGGAAGCAGAAGTGGGCGTAGACTATTCAAACATTATCGACCAATGTTTCTGGC 1794
Query 1567 AACAACATCCTCACATTCTTAGCTGCTCCTAACACAAAGGTATTCATTGCTAC 1619
|||||||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 1795 AACAACATCCTCACATTCTTAGCTTCTCCTAAGACA--GGTATTCATTGCTAC 1845
Score = 1051 bits (569), Expect = 0.0
Identities = 625/653 (96%), Gaps = 0/653 (0%)
Strand=Plus/Plus
Query 16 AAAATATGGCGAATAGTAAGTACGAGTACGTGAAGTCATTCGAAGTGGAAGACGAAGTTA 75
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 208 AAAATATGGCGAATAGTAAGTACGAGTACGTGAAGTCATTCGAAGTAGAAGACGAAGTTA 267
Query 76 TGTTTCCCAATTTGATAATTATCCGTATCGATGGCCGTGATTTTTCGAGATTTTCCCAAG 135
||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 268 TGTTTCCCAATCTGATAATTATCCGTATCGATGGCCGTGATTTTTCCAGATTTTCTCAAG 327
Query 136 TTCACAAGTTTGAGAAGCCTAATGATGAGACGGCTCTAAATTTGATGAATTCATGTGCAT 195
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 328 TTCACAAGTTTGAAAAGCCTAATGATGAGACATCTCTAAATTTGATGAATTCATGTGCAT 387
Query 196 CTTCGGTTTTGGAAGAGTATCCTGATATAGTCTTTGCATATGGATATAGTGACGAGTACA 255
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CTTCGGTTTTAGTAGAGTATCCTGATATAGTCTTTGCATATGGATATAGTGACGAGTACA 447
Query 256 GCTTTGTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGGTTTTATCTT 315
||||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||
Sbjct 448 GCTTTGTATTCAAGAAAGCATCAAGATTCTACCAGAGACGAGCCAGTAAGATTCTGTCTT 507
Query 316 TGGTAGCCTCATTTTTTGCTGCGGTCTATGTAACGAAATGGAAAGAGTTCTTTCCTCATA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TGGTAGCCTCATTTTTTGCTGCGGTCTATGTAACGAAATGGAAAGAGTTCTTTCCTCATA 567
Query 376 GAAAATTAGTATATGCTCCTTCATTCGCTTCAAAAGCTGTAAGTTGCGCATCAATAGAGG 435
|||||||| ||||||||||||||| |||||||||| ||||||||| ||||| ||||||
Sbjct 568 CAAAATTAGAATATGCTCCTTCATTTGCTTCAAAAGTTGTAAGTTGTGCATCGGTAGAGG 627
Query 436 TTCTTCAAGCTTACCTTGCTTGGAGACAACATGACTGCCACATCGGTAATCAGTATGACA 495
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 628 TTCTTCAAGCTTACCTTGCGTGGAGACAACATGACTGCCACATCAGTAATCAGTATGACA 687
Query 496 CATGTTTTTGGATGTTAGTAAAAAGTGGAAAGACCTTAAGTGAAACACAGGAGATTTTGA 555
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 688 CATGTCTTTGGATGTTAGTAAAAAGTGGAAAGACCTTAAGTGAAACTCAGGAGATTTTGA 747
Query 556 AGGATACACAGAAACAACAGAGAAATGAGCTTCTTTTCCAGCAATTTGGTATTAATTATA 615
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 748 AGGATACACAGAAACAACAGAGAAATGAGCTTCTTTTTCAACAATTTGGTATTAATTATA 807
Query 616 AAATGCTTCCTGTATTGTTTCGCCAAGGATCATGCCTTTTTAAGACAAAGGTG 668
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 808 AAATGCTTCCTGTATTATTTCGTCAAGGATCATGCCTTTTTAAGACAAAGGTG 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5