BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951744

Length=1127
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48220.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   135    7e-31
  AT3G28330.1 | Symbols:  | F-box family protein-related | chr3:1...  62.1    1e-08


> AT3G48220.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: F-box family protein (TAIR:AT3G28223.1); Has 107 Blast 
hits to 106 proteins in 3 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr3:17852284-17853557 
REVERSE LENGTH=645
Length=645

 Score =  135 bits (73),  Expect = 7e-31
 Identities = 323/434 (74%), Gaps = 55/434 (13%)
 Strand=Plus/Plus

Query  175  AGTCGTGGCTCACTACG-ATGTGCAATC-TGGGGACTTACACGATCTCTAGGTTCTTACT  232
            ||||||||||||||||| ||| | || | ||||| ||| ||||||||||| |||||||| 
Sbjct  60   AGTCGTGGCTCACTACGAATGCG-AAACTTGGGGTCTTCCACGATCTCTAAGTTCTTACA  118

Query  233  TGTCGTCTTTCCTAA-CCAAAACATTCGAGACACACAA-T-GAAAAGGTCAGAGT--CC-  286
            | || |||||| ||| ||| || |||| | | || ||| |   ||| || | | |  || 
Sbjct  119  TCTCTTCTTTCATAACCCACAA-ATTC-A-ATACTCAATTCCCAAACGTTACACTCGCCG  175

Query  287  TGGCTTACAC-CAACGTTGGATTGATTTTGAT-TGGTTTGGGATCTGACTTGAAGAAT-C  343
            |||||||||| | | |||||||||||||||||  | | | ||  |  ||   || | | |
Sbjct  176  TGGCTTACACTC-ATGTTGGATTGATTTTGATCAGCTCT-GG--C-AAC---AA-ATTAC  226

Query  344  CAACTTACTACATGGCTAATCCGATTTCACA-ACAATGTGT-GAAAATCCCACCTCGGCC  401
             |||||||||  ||||||||||||| ||| | ||||||||| | ||||  | |||| |  
Sbjct  227  TAACTTACTATGTGGCTAATCCGATCTCA-AGACAATGTGTCG-AAAT--C-CCTCAG--  279

Query  402  TCTTCGTCCTCTAGGTCAACAAG-AGG-AATGTTTCAGA-C-CTGGACTCGTCAC-ACGC  456
             |  | |||||     |||| ||  ||  || ||| | | | |||| || ||||| |  |
Sbjct  280  -C--C-TCCTC-----CAAC-AGTTGGTTATTTTTTA-ACCTCTGGGCTTGTCACAAAAC  328

Query  457  ATTGAAAAAGACGTCCTTTTAGGTTACAAAGTTGTTTTGATGGATAGGACTAACATCAGA  516
             ||||  |  ||||| ||||||||||||||||||||||||||||||  | |||| |  ||
Sbjct  329  -TTGAGGATCACGTCGTTTTAGGTTACAAAGTTGTTTTGATGGATACAAGTAACTTG-GA  386

Query  517  ACAGGTGTCTTAAGTTTAGTCG-TATATTCATCTGAGACAGGCTTGTGGAGTTTCAACAC  575
             | | |||| |||||||| | | |||||||||| |||||||| || ||||||||||| ||
Sbjct  387  -C-GATGTCATAAGTTTACT-GATATATTCATCCGAGACAGGGTTATGGAGTTTCAAAAC  443

Query  576  TCTCCAGTCTCATC  589
             ||||| |||||||
Sbjct  444  CCTCCAATCTCATC  457


> AT3G28330.1 | Symbols:  | F-box family protein-related | chr3:10586566-10587712 
REVERSE LENGTH=1050
Length=1050

 Score = 62.1 bits (33),  Expect = 1e-08
 Identities = 35/36 (97%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  539  TATATTCATCTGAGACAGGCTTGTGGAGTTTCAACA  574
            ||||||||||||||||||||||||||||| ||||||
Sbjct  401  TATATTCATCTGAGACAGGCTTGTGGAGTCTCAACA  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55270800045


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5