BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951754

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58920.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   163    8e-40


> AT5G58920.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:23793129-23794245 
FORWARD LENGTH=830
Length=830

 Score =  163 bits (88),  Expect = 8e-40
 Identities = 125/142 (88%), Gaps = 6/142 (4%)
 Strand=Plus/Plus

Query  178  CATTGCTATGCACCTT-CACAATCTTTGGCATCGCATAGGATTTACATTGAAACGTCTCC  236
            |||||||||||| ||| |||||||||||| || || | ||||||||| ||||||||||||
Sbjct  241  CATTGCTATGCA-CTTACACAATCTTTGGTATGGC-TTGGATTTACAATGAAACGTCTCC  298

Query  237  TTTAGGTTGGTGGACGTTGAAGTCAAGACCAAGGGAGGAGAGAGAATGGGCCCATTTGTA  296
            |||||||||||||||| ||||| ||||||||| ||| |||||||||| ||| ||||||||
Sbjct  299  TTTAGGTTGGTGGACGCTGAAGCCAAGACCAAAGGAAGAGAGAGAATTGGCTCATTTGTA  358

Query  297  ATGACCGGCAG-GAGTTTCCTT  317
             ||| |||| | ||||||||||
Sbjct  359  -TGAGCGGC-GTGAGTTTCCTT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14728450457


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5