BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951756
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58940.1 | Symbols: CRCK1 | calmodulin-binding receptor-like... 2381 0.0
> AT5G58940.1 | Symbols: CRCK1 | calmodulin-binding receptor-like
cytoplasmic kinase 1 | chr5:23798562-23800823 FORWARD LENGTH=1617
Length=1617
Score = 2381 bits (1289), Expect = 0.0
Identities = 1413/1474 (96%), Gaps = 4/1474 (0%)
Strand=Plus/Plus
Query 1 ATAACCATGTCTATAGACATATGCCAATGAGGAGCAAAACCCCAACGCCTCTCCGCTTCT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ATAACCATGTCTATAGACACATGCCAATGAGGAGCAAAACCCCAACGCCTCTCCGCTTCT 137
Query 61 CAAATGGAAAGCATCAAAAAGCTCATTCTGACTATAGTTGGAGTGATGTAGGTACTGGGG 120
|||||||||||||||| | || | ||||||| |||||||||| |||||||||||||||||
Sbjct 138 CAAATGGAAAGCATCAGAGAGATGATTCTGAGTATAGTTGGACTGATGTAGGTACTGGGG 197
Query 121 AGAAGGCGAGGAATGTCTCCGTCCTCGGTGCCATCAGAAGGGCAGCTAAGAAAGTCTTTG 180
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 198 AGAAGGCCAGGAATGTCTCCGTCCTCGGTGCGATCAGAAGGGCAGCTAAGAAAGTCTTTG 257
Query 181 CTATTATTTTCTTAGGACAACAAAAGTTCAAGCCCACAGAATGTAGATCTGATCCTGGAG 240
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 258 TTATTATTTTCTTAGGACAACGGAAGTTAAAGCCAACAGAATGTAGATCTGATCCTGGAG 317
Query 241 AGAGCAGCACGCTTGACAGAGAATCTACATTATCAGGCTGGACTGGCTATTCATCACCAA 300
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 318 AGAGCAGCACGCACGACAGAGAATCTACATTATCAGGCTGGACTGGTTATTCATCACCAA 377
Query 301 GCTCTTTTGGAAGGTCAGCAGAAAGAAAGATTTCAGGTCAATATCGTTTTTCTGGTTCAA 360
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 378 GCTCCTTTGGAAGGTCAACAGAAAGAAAGGTTTCAGGTCAATATCGTTTTTCTGGTTCAA 437
Query 361 GATTTCAAAGTCCTGGGAAAGATTCTTCTTCTAGCAAAAGTTGGC-TCCAAGGCCCAGTT 419
||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 438 GATTTCAAAGTCCTGGGAAAGATTCTTCTTCTAGCAAAAGTTGGCAT-CAAGGCCCGGTA 496
Query 420 ATATTTTCTTTTGGGGAGCTTCAAAGGGCAACTGCAAATTTTTCATCGGTTCATCAAATT 479
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 497 ATATTTTCTTTTGGGGAGCTTCAAAGGGCAACCGCAAATTTTTCTTCGGTTCATCAAATT 556
Query 480 GGGGAAGGCGGTTTTGGAACTGTTTTTAAGGGAAAGCTTGATGATGGAACTATTGTTGCT 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 557 GGGGAAGGCGGTTTTGGAACTGTTTTTAAGGGAAAACTTGATGATGGAACTATTGTTGCT 616
Query 540 ATCAAGCGTGCAAGAAAGAACAACTATGGCAAAAGCTGGTTGCTAGAGTTCAAGAATGAA 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 ATCAAGCGTGCGAGAAAGAACAACTATGGCAAAAGCTGGTTGCTAGAGTTCAAGAATGAA 676
Query 600 ATATACACATTGTCGAAGATTGAGCATATGAATTTGGTAAAGCTGTATGGATTTCTTGAA 659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 ATATACACATTGTCAAAGATTGAGCATATGAATTTGGTAAAGCTGTATGGATTTCTTGAA 736
Query 660 CATGGAGATGAAAAGGTTATTGTTGTTGAATATGTTGGCAATGGAAACCTACGAGAACAT 719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 737 CATGGAGATGAAAAGGTTATTGTTGTTGAATATGTTGCCAATGGAAACCTACGAGAACAT 796
Query 720 CTAGATGGTTTAAGGGGTAACCGCCTTGAAATGGCAGAACGTCTTGAGATTGCGATTGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 797 CTAGATGGTTTAAGGGGTAACCGCCTTGAAATGGCAGAACGTCTTGAGATTGCAATTGAT 856
Query 780 GTATCTCATGCATTGACCTATTTGCACACATATACTGATACTCCAATAATTCACAGAGAC 839
|| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 857 GTGGCTCATGCATTGACCTATTTGCACACATATACTGATAGTCCAATAATCCACAGAGAC 916
Query 840 ATTAAAGCATCAAATATTCTCATCACGAATAAGCTTAGAGCCAAAGTGGCAGACTTTGGC 899
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 917 ATTAAAGCATCAAATATCCTCATCACGAATAAGCTTAGAGCCAAAGTGGCGGACTTTGGC 976
Query 900 TTTGCTCGTTTAGTTTCGGAAGATCTCGGGGCTACTCATATATCGACTCAGGTCAAAGGA 959
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 977 TTTGCTCGTTTAGTGTCGGAAGATCTTGGGGCTACTCATATATCGACTCAGGTCAAAGGA 1036
Query 960 TCTGCAGGCTATGTGGATCCAGATTACCTCAGGACGTTTCAACTAACTGACAAGAGTGAC 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1037 TCTGCAGGCTATGTGGATCCAGATTACCTCAGGACGTTTCAACTAACTGACAAGAGCGAC 1096
Query 1020 GTTTACTCTTTTGGTGTTTTGCTCATAGAGCTTCTCACTGGAAGACGTCCCATTGAGTTA 1079
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1097 GTTTACTCTTTTGGTGTTTTGCTCGTAGAGATTCTCACTGGAAGACGTCCCATTGAGTTA 1156
Query 1080 AAGAGACCACAGAAA-GACCGACTCACGGTTAAATGGGCATTGAGGAGACTCAAAGACGA 1138
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AAGAGACCAC-GAAAAGACAGACTCACGGTTAAATGGGCATTGAGGAGACTCAAAGACGA 1215
Query 1139 TGAAGCTGTTCTCATAATGGACCCGTTTCTCAAGAGAAACCGAGCCGCTATTGAAGTGGC 1198
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1216 TGAAGCTGTTCTCATAATGGACCCATTTCTCAAGAGAAACCGAGCCGCCATTGAAGTGGC 1275
Query 1199 TGAGAAAATGCTGAGACTGGCGAGCGAATGTCTTGCCCCGACGAGAGCTACACGTCCAGC 1258
|||||| ||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 1276 TGAGAAGATGCTGAGACTTGCGAGCGAATGTGTTACCCCGACGAGAGCTACACGTCCAGC 1335
Query 1259 TATGAAAGACATTGCGGAAAAGCTATGGGCTATAAGGAGAGAGATGAAGGAGACGATGAT 1318
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 TATGAAAGGCATTGCGGAAAAGCTATGGGCTATAAGGAGAGAGATGAAGGAGACGATGAT 1395
Query 1319 ATGTTCCTCTGCCTCTAATTCTTCGTGTTCTTCAACAACACATAGCTTCATTGGTCGTGA 1378
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1396 ATGTTCATCTGCATCTAATTCTTCTTGTTCTTCAACAACACATAGCTTCATTGGTCGTGA 1455
Query 1379 TTCAGACAGATTTGCATTGCCGAGGATCGAAGACAACGAGAATAGCATTGAGTTACTCTC 1438
||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||
Sbjct 1456 TTCAGACAGATATGCATTGCCGAGGATTGAAGATAACGAGAATAGCATTGAGTAACTCTC 1515
Query 1439 TCCTTGATGATATCAATTTGTGAAACATGTTGCT 1472
||||||||||||||||| ||||||||||| ||||
Sbjct 1516 TCCTTGATGATATCAATCTGTGAAACATGCTGCT 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72589988070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5