BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951757
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58950.1 | Symbols: | Protein kinase superfamily protein | ... 1869 0.0
AT3G46930.1 | Symbols: | Protein kinase superfamily protein | ... 464 9e-130
> AT5G58950.1 | Symbols: | Protein kinase superfamily protein
| chr5:23800928-23803673 REVERSE LENGTH=2310
Length=2310
Score = 1869 bits (1012), Expect = 0.0
Identities = 1125/1179 (95%), Gaps = 9/1179 (1%)
Strand=Plus/Plus
Query 1 TTTGTTTTTCGAGCTTAGAGATGGATGAAGAGGCTACTTCTTGGATTAGGAGGACTAAGT 60
|||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 506 TTTG-TTTTCGAGCTTAGAGATGGATGAAGAGGCTACTTCGTGGATTAGGAGGGCTAAGT 564
Query 61 TTTCTCAAACGGTTTCTTATCGTTTGAATTCATCAAAGTTAGCTTCTCTCCCTTTTATGG 120
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 565 TTTCTCAAACGGTTTCTTATCGTTTGAATTCTTCAAAGTTAGCTTCTCTTCCTTTTATGA 624
Query 121 TAAACCAAGATAAGATTTCTGGATTGAAAA-CTATACCCCAGAGATCATCATCTTCTTCG 179
|||||||||||||| |||||||||| |||| ||||||| ||||||||||| ||||| |||
Sbjct 625 TAAACCAAGATAAGTTTTCTGGATT-AAAAGCTATACCTCAGAGATCATCTTCTTCGTCG 683
Query 180 TCGGCATCATCATCGGATCCCAAGTTTGTTTCGAGTAACTCACAGACT-TGGGAAGATAC 238
|||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||
Sbjct 684 TCGGCATCATCATCGGATCCTAAGTTGGTTTCGAGTAACTCACAGACTACGGG-AGATAC 742
Query 239 CTCGAGTTTGGAA---GCTGATGTATATGTTGTTGATTCGGAAATACAGACAAACCCTGT 295
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 743 TTCGAGTTTGGAAGCTGCTGATGTATATGTTGTTGATTCGGAAATACAGACAAACCCGGT 802
Query 296 AACTAATAAACATAGATCTGTTTCTCCTTCGCCTCAGATGGCTGTTCCTGATGTGTTTAA 355
||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 803 TACTCATAAGCAGAGATCTGTTTCTCCTTCGCCTCAGATGGCTGTTCCCGATGTGTTTAA 862
Query 356 GGAAGCAAGATCTGAGCGTAAGAGATTTTCTACGCCACATCCAAGAAGAGTGGAATCGGA 415
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 863 GGAAGCGAGGTCTGAGCGTAAGAGATTTTCTACTCCACATCCAAGAAGAGTGGAATCGGA 922
Query 416 AAAGGGAATGAAGCCTAAGTTATCTCATAAAAACTCCTTTGAAAAGAGATCATTTAATTT 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 923 AAAGGGAATGAAGCCTAAGTTATCTCATAAAAACTCCTTTGACAAGAGATCATTTAACTT 982
Query 476 GCGGTCTCCATCCGGTCCTATCAGAGATCTTGGCACTCTGAGAATTCAAGAGAGGGTGAA 535
||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 983 GCGGTCTCCTTCAGGTCCTATCAGAGATCTTGGCACTTTGAGAATTCAAGAGAGGGTCAA 1042
Query 536 GAGCAAGAAGGACACAGGATGGTCTAAGCTTTTTGATAATACTGGTCGTAGAGTGAGTGC 595
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GAGCAAGAAGGACACTGGATGGTCTAAGCTTTTTGATAATACTGGTCGTAGAGTGAGTGC 1102
Query 596 TGTAGAAGCTTCTGAAGAGTTCCGTGTTGATATGTCAAAGTTGTTCTTTGGGCTTAAGTT 655
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1103 TGTGGAAGCTTCTGAAGAGTTCCGTGTTGATATGTCAAAGCTGTTCTTTGGGCTTAAGTT 1162
Query 656 TGCTCATGGGTTATACAGCCGGCTATACCATGGTAAGTATGAAGATAAAGCTGTTGCCGT 715
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1163 TGCTCATGGTTTATACAGCCGGCTATATCATGGTAAGTATGAAGATAAAGCTGTTGCCGT 1222
Query 716 GAAGCTTATCACTGTACCTGATGATGACGATAATGGATGCTTGGGAGCTCGTTTAGAGAA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GAAGCTTATCACTGTACCTGATGATGACGATAATGGATGCTTGGGAGCTCGTTTAGAGAA 1282
Query 776 ACAGTTTACCAAGGAAGTCACCCTTTTGTCTCGATTGACTCATCCGAATGTTATAAAGTT 835
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1283 ACAGTTTACCAAGGAAGTGACCCTTTTGTCTCGATTGACCCATCCAAATGTTATAAAGTT 1342
Query 836 TGTGGGAGCGTATAAAGATCCGCCTGTATATTGTGTCCTCACGCAGTATTTACCTGAAGG 895
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 TGTTGGAGCGTACAAAGATCCGCCTGTATATTGTGTCCTCACGCAGTATTTACCTGAAGG 1402
Query 896 ATCTTTAAGATCTTTTCTGCACAAGCCTGAGAATAGGTCTCTTCCTTTGAAAAAGCTTAT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 ATCTTTAAGATCTTTTCTGCACAAGCCTGAGAATAGGTCTCTTCCTTTGAAAAAGCTTAT 1462
Query 956 AGAGTTTGCTCTAGATATTGCAAGAGGAATGGAATATATTCACTCACGACACATAATTCA 1015
|||||||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||
Sbjct 1463 AGAGTTTGCTATAGATATTGCTAGAGGGATGGAATATATTCACTCACGACGCATAATTCA 1522
Query 1016 TCGGGATCTTAAGCCAGAAAATGTATTGATCGACGAAGACTTCCATTTGAAGATTGCTGA 1075
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1523 TCGGGATCTTAAGCCAGAAAATGTATTGATCGACGAAGAATTCCATTTGAAGATCGCTGA 1582
Query 1076 CTTTGGCATAGCGTGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCTGGAACATA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1583 CTTTGGCATAGCGTGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCCGGAACATA 1642
Query 1136 TAGGTGGATGGCACCTGAAATGATAAA-CGGAAACCACA 1173
||||||||||||||||||||||||||| |||||||||||
Sbjct 1643 TAGGTGGATGGCACCTGAAATGATAAAACGGAAACCACA 1681
Score = 169 bits (91), Expect = 7e-41
Identities = 102/107 (95%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 1174 CGGGGGCAGCAGCAGCAGCGGCCTTGGTGGCTCAGCCTTGCCTAAGCCTAAATTCGCTTG 1233
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2042 CGGTGGCAGCAGCAGCAGCGGCCTTGGTGGCTCAGCCTTGCCGAAGCCTAAATTCGCTTG 2101
Query 1234 AGAGACATGAA-GAGTCTATTTTGTAAATTTATATATAATACAAAAA 1279
||||||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct 2102 AGAGACAGGAAAGAGTCTCTTTTGTAAATTTATATATAATACAAAAA 2148
> AT3G46930.1 | Symbols: | Protein kinase superfamily protein
| chr3:17285643-17288032 FORWARD LENGTH=1844
Length=1844
Score = 464 bits (251), Expect = 9e-130
Identities = 722/938 (77%), Gaps = 78/938 (8%)
Strand=Plus/Plus
Query 276 GAA-ATACAGACAAACCCTGTAACTAATAA-ACATAGATCTGTTTCTCC-TTCGCCTCAG 332
||| || |||| || || || |||||||| | | |||||||||||||| || ||||||
Sbjct 527 GAAGATGCAGAGGAATCCAGTTACTAATAAGA-AGAGATCTGTTTCTCCGTT-GCCTCAT 584
Query 333 ATGGCTGTTCCTGATG-TGTTTAAGGAAGC-AAGATCTGAGCGTAAGAGATTTTCTACGC 390
|||||| || |||||| | |||| ||||| ||| ||||| |||||| |||||||| |
Sbjct 585 ATGGCTCTTTCTGATGCT-TTTATCGAAGCAAAG-TCTGATATTAAGAGGTTTTCTACTC 642
Query 391 CACATCCAAGAAGAGTGGAATCGGAAAAGGGAATGAA-GCCTAAGT--T-ATCTCATAAA 446
||||||| |||||||||||| | || ||||||||||| ||| |||| | || | |||
Sbjct 643 CACATCCTAGAAGAGTGGAACCAGAGAAGGGAATGAAGGCC-AAGTCGTCGTCCCGCAAA 701
Query 447 AACTCCTT-TGA-AAAGAGATCATTTAATTTGCGGT--C--TC-CA-TCCGGTCCTATCA 498
| | ||| ||| ||| | |||| ||||| | |||| | || || || |||||||| |
Sbjct 702 GA-TTCTTCTGAGAAA-AAATCAGTTAATCTACGGTCCCTGTCTCACTCGGGTCCTATTA 759
Query 499 GAGATCTTGGCACTCTGAGAA-TTCAAGAGAGGGTG-AAGAGCAAGA-AGGACACAGGA- 554
| |||||| | || | || || || ||||||||| | |||||||||| | || | || |
Sbjct 760 GGGATCTTAGTACGCAGA-AAGTTAAAGAGAGGG-GAAAGAGCAAGATA-GATA-AGAAG 815
Query 555 TGGTCTAAGCT-TTTTGA-TAATACTGG-TCGTAGAGTGAGTGCTGTAGAAGCTTC-TGA 610
| || ||| | | |||| | ||| || || || ||| ||| ||| || || | | |||
Sbjct 816 TCTTCAAAG-TCTGTTGACT-ATAGAGGTTC-TAAAGTAAGTTCTGCAGGAG-TGCTTGA 871
Query 611 AGAGTTCCGT-GTTGATATGTCAAAGTTGTTCTT-TGGGCTTAAGTTTGCTCATGGGTTA 668
||| | || | ||||| |||| |||||| |||| |||| || ||||||||| ||| |
Sbjct 872 AGAATGCC-TCATTGATGTGTCTAAGTTG-TCTTATGGGGATAGGTTTGCTCACGGGAAA 929
Query 669 TACAGCCGGCTATACCATGGT-AAGTATGAAGATAAAGCTGTTGC-CGTGAAGCTTATCA 726
|| |||| | | || |||||| || ||||||| ||||||||||| | ||||| ||||||
Sbjct 930 TATAGCCAGATTTATCATGGTGAA-TATGAAGGCAAAGCTGTTGCTC-TGAAGATTATCA 987
Query 727 CTGTACCTGATG--A-TGACGATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTA 783
| | ||||| | | |||||| || || |||||||||||||||||| ||| ||||||
Sbjct 988 CAGCGCCTGAGGATAGTGACGA-CAT--ATTCTTGGGAGCTCGTTTAGAAAAAGAGTTTA 1044
Query 784 CCAAGGAAGTCACCCTTTTGTCTCGATTGA-CTCATCCGAATGTTATAAAGTTTGTGGGA 842
| ||||| ||| ||||| |||||| | | | ||||| ||||| | |||||||| |||
Sbjct 1045 TCGTGGAAGCCACTCTTTTATCTCGACTAAGC-CATCCAAATGTCGTTAAGTTTGTTGGA 1103
Query 843 GCGTATAAAGATCCGCCTGTATATTGTGTCCTCAC-GCAGTATTTACCT-GAAGGATCTT 900
| | | || ||| | | ||| || |||| | ||||| ||||| | ||| ||||
Sbjct 1104 --G--T-GA-AT---ACTGGAAACTGTATCATCACAG-AGTATGTACCTCG-AGGGTCTT 1152
Query 901 TAAGATCTTTTCTGCACAAGCCT-GAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAG 959
||||||| | |||||||||| || ||| | | || ||||||||| || |||| || ||
Sbjct 1153 TAAGATCATATCTGCACAAG-CTCGAGCAGAAATCCCTTCCTTTGGAACAGCTAATCGAT 1211
Query 960 TTTGCTCTAGATATTGC-AAGAGGAATGGAATATATTCACTCACGACACATAATTCATCG 1018
|||| ||| |||||||| || |||||||||||||||||||||| || | ||| ||||||
Sbjct 1212 TTTGGTCTGGATATTGCTAA-AGGAATGGAATATATTCACTCAAGAGAGATAGTTCATCA 1270
Query 1019 GGATCTTAAGCCAGAAAATGTATTGATCGACGAA-GACTTCCATTTGAAGATTGCTGACT 1077
|||||| ||||||||||| || ||||||||| || ||||| || ||||||||||||||||
Sbjct 1271 GGATCTGAAGCCAGAAAACGTGTTGATCGAC-AATGACTTTCACTTGAAGATTGCTGACT 1329
Query 1078 TTGGCATAGCGTGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCT-GGAACATAT 1136
||||||||||||||||||||||||||||||| | |||| ||| || | ||||| |||
Sbjct 1330 TTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTTGGGGGATAACA-TAGGAACTTAT 1388
Query 1137 AGGTGGATGGCACCTGAAATGATAAA-CGGAAACCACA 1173
|||||||||||||||||| | |||| |||| ||||||
Sbjct 1389 AGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACA 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5