BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951762
Length=2923
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77620.1 | Symbols: | P-loop containing nucleoside triphosp... 4442 0.0
> AT1G77620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:29167764-29172867
REVERSE LENGTH=3626
Length=3626
Score = 4442 bits (2405), Expect = 0.0
Identities = 2770/2944 (94%), Gaps = 33/2944 (1%)
Strand=Plus/Plus
Query 1 CTGAGAGTGCTGATCAACAAATGAATTTTGACTCTCTTGAACCCCGACCCAAGGAGTTTG 60
|||||||| ||||||||||||| || ||| ||||||||||||| || |||||||||||||
Sbjct 575 CTGAGAGTCCTGATCAACAAATAAAATTTAACTCTCTTGAACCTCGGCCCAAGGAGTTTG 634
Query 61 ATTTAAATGAACTGCCATCTCTTTCACATCCTGACGTGTGTATCATTGATGATGAGGAGC 120
||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 635 ATTTAAATGAATTGCCATCTCTTTCACATCCTGACGTGTGTGTCATCGATGATGAGGAGC 694
Query 121 CTGAACAATGTGTTAGTCAATCAGAAGGTATCGCAGAGGCATCTTCGGTAGTCTTAGTAG 180
|||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 695 CTGAACAATGCACTAGTCAATCAGAAGGTATTGCAGAGGCATCTTCGGTAGTCTTAATAG 754
Query 181 CAGACCAGGAGGAGAAACGTGGGTACGTTGGCTCCTTAGATGGAGCAGAATCGGATTGTG 240
||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||||
Sbjct 755 AAGACCAGGAGGAGAAACGTGGGTGCCTCGGCTTCTTAGATGGAGCAGAATCGGATTGTG 814
Query 241 AAGTTCATGAAGCAATTAACTTGTCTGATGATGCTGGTGATGCAG-CAGACATTTCTCAT 299
||||||||||||||||||||||||||||||||||||||| || || || | |||||||||
Sbjct 815 AAGTTCATGAAGCAATTAACTTGTCTGATGATGCTGGTGGTGAAGCCA-ATATTTCTCAT 873
Query 300 GTAATGCAACACCTGTCATGTCGAGAAAGTAATGACTCCAGTGGCCAACCTCGTAATAGC 359
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 874 GAAATGCAACACCTGTCATGTCGAGAAAGTAATGACTCCAGTGGCCAACCTTGTAATCGA 933
Query 360 TTATGGGTAGATAAGTACCAGCCAAGAAGTGCCTCGGAGGTATGTGGTAATACTGAATCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TTATGGGTAGATAAGTACCAGCCAAGAAGTGCCTCGGAGGTATGTGGTAATACTGAATCT 993
Query 420 GTAAAAGTAATGAATGAATGGCTGCGCCAATGGCAGGAGAGAGGGTTTCAGCCAGATAAA 479
||||| ||||||||||||||||||||||||||| | |||||||||||||||||| | |||
Sbjct 994 GTAAAGGTAATGAATGAATGGCTGCGCCAATGGTATGAGAGAGGGTTTCAGCCAAACAAA 1053
Query 480 GACTTTTTGAGTAGTGATGAAGATAAATCGCAAGATGCTGACTACAACTGTTCTGAAAGT 539
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1054 GACTTTTTGAGTAGTGATGAAGATAAATCGCAAGATGCTGATTACAACTGTTCTGAAAGT 1113
Query 540 GGCTCTGACTCAGAAAATATTGGTGCTGAAGATCGCCTGAAAAATGTGCTCTTAATCGTT 599
| ||||||||||||||| | ||||||||||||| ||| ||| ||||| |||||||| |||
Sbjct 1114 GACTCTGACTCAGAAAAAAGTGGTGCTGAAGATAGCCAGAAGAATGTTCTCTTAATTGTT 1173
Query 600 GGTCCAGCTGGGAGTGGGAAATCTGCAGCTATTCATGCATGCGCCAAGGAACAAGGATTT 659
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1174 GGTCCAGCTGGGAGTGGGAAATCTGCAGCCATTCATGCATGCGCCAAGGAACAAGGATTT 1233
Query 660 AAAATCCTAGAGTCCAACACATCAGAATGCCGAAGTGGAACAGTAGTTAGGCAGAAATTT 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 AAAATCCTAGAGTCCAATACATCAGAATGCCGAAGTGGAACAGTAGTTAGGCAGAAATTT 1293
Query 720 GGGGAGGCTCTCAAGTCATATAGCCTGTCAAGGTCCTTGGACCCTCTTTTCAATTCCTGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GGGGAGGCTCTCAAGTCATATAGCCTGTCAAGGTCCTTGGACCCTCTTTTCAATTCCTGT 1353
Query 780 ACTGATGGCAATGGGGTAGAGGATGTAATGGAAGTGGTACCCATATTACATATCCAGAAT 839
||||||||||||||||||||||||||| | |||||| | ||| |||||||||||||||||
Sbjct 1354 ACTGATGGCAATGGGGTAGAGGATGTAGTTGAAGTGATGCCCGTATTACATATCCAGAAT 1413
Query 840 GATGGAGCTAACTTGAAGCCTTTAATTCTCTTT-GAAGATGTAGATGTTTGCTTTGCTGA 898
||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 1414 GATGGAGCTAACTTGAAGCCTTTAATTCT-TTTCGAAGATGTAGATATTTGCTTTGCTGA 1472
Query 899 AGATCGTGGTCTCGTTTCTGCTATCCAGCAGATTGCTGCGAAAGCAAAAGGGCCTGTGGT 958
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1473 AGATCGTGGTCTCGTTTCTGCTATCCAGCAGATTGCTGTGAAAGCAAAAGGGCCTGTGGT 1532
Query 959 ATTGACTACCAATGACAAGAATCATGGTTTACCAGACAACTTAGAGAGGATAGAAATATA 1018
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1533 ATTGACTGCCAATGACAAGAATCATGGGTTACCAGACAACTTAGAGAGGATAGAAATATA 1592
Query 1019 CTTTTCATTGCCATCAAAAGAAGAACTATTTAGTCACCTTTCTCTGGTTTGTGCAGCAGA 1078
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1593 CTTTTCATTGCCATCAAAAGAAGAACTGTTTAACCACCTTTCTCTGGTTTGTGCAGCAGA 1652
Query 1079 GGAAGTTAAAGTTAATCGTGGTTCACTAGATCAAATGACCACGTCTTGTGGTGGTGATAT 1138
||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |||||
Sbjct 1653 GGAAGTTAAAGTTAATCATGGTTCACTAGAGGAAATGACCACGTTTTGTGGTGGAGATAT 1712
Query 1139 ACGGAAAGCAATTATGCAATTGCAGTTTTGGTTTCAGAGTAAACCGAAAAGAGCCAGAAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 ACGGAAAGCAATTATGCAATTGCAGTTTTGGTTTCAGAGTAAACCGAAAAGAGCCAGAAA 1772
Query 1199 GGTGAAGAACACAGGTAATCAAGATCTCTTTGATCATGAAGCTGGCCACTTGCTGCTTCC 1258
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 GGTGAAGAATACAGGTAATCAAGATCTCTTTGATCATGAAGCTGGCCACTTGCTGCTTCC 1832
Query 1259 CAAGATAATTACACGGGATTTCCCTTCTCAATTATCTCAGTTGGTGGAGAATGAGATTGC 1318
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 CAAGATAATTGCACGGGATTTCCCTTCTCAATTATCTCAGTTGGTGGAGAATGAGATTGC 1892
Query 1319 TAAGGTAATATCTTTAGAAGAGGAAAGCTATAACACAGTGGAAGTATTTGTTGAAGAGGT 1378
||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1893 TAAGGTATTATCTATGGAAGAGGAAAGAAATAACACAGTGGAAGTATTTGTTGAAGAGGT 1952
Query 1379 TGAAAACGAAAAAATGCTTAATAGATTATGGAGGCGAGGCGCAGGAAAGAACAGCATACA 1438
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1953 TGAAAACGAAAAAATGCTTAATAGATTATGGAGGCGTGGCACAGGAAAGAACAGTATACA 2012
Query 1439 AGCCAAGAAAACAGCCATGTTCAGGCAGAACACTACTTTTGAAGATTATGATGAATTAGA 1498
|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2013 AGCCAAGAAAGCAGCGATGTTCAGGCAGAACACTACTTTTGAAGATTATGACGAATTAGA 2072
Query 1499 AGACGTCTTAAGTATTCCGTGTGAACTTAGCAACACTTCGTACCAACCACTCTCTTTCTC 1558
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2073 AGACGTCTTAAGGATTCCGTGTGAACTTAGCAACACTTCCTACCAACCACTCTCTTTCTC 2132
Query 1559 TCAGCCAAACAGAAGGCGAAAGCTCAATGTTGTGATGTCCTCTGATTCAGAAGATGAGCC 1618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 TCAGCCAAACAGAAGGCGGAAGCTCAATGTTGTGATGTCCTCTGATTCAGAAGATGAGCC 2192
Query 1619 TCTGACTGACATACGGGTTTCCATTGCACAACATCAGAAGGACGACAGATTGATTTTCCA 1678
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2193 TCTGACTGACATACGGGTTTCCATTTCTCAACATCAGAAGGACGACAGATTGATTTTCCA 2252
Query 1679 AGAAGATGGTACGTTGTCCTCATATTGGCCAGATATGCAAAAGGAAACAAACCTATTAGC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2253 AGAAGATGGTACGTTGTCCTCATATTGGCCAGATATGCAAAAGGAAACAAACCCATTAGC 2312
Query 1739 TGATCCTTCAGTTCCTTCCAGAGCAGAAATATTGGAGGCAACTTGTTATCAGTATGAGAC 1798
||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 2313 TGATCCTTC--T-------AGAGCAGAAATATTGGAGGCAGCTTGTTATCAGTATGAGAC 2363
Query 1799 ATCAAAATTCTCTTGCATTAATGAGGTGTCCCAGTCAGTTGATGTATCATGTGTACCAGA 1858
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2364 ATCAAAATTCTCTTACATTAATGAGGTGTCCCAGTCAGTTGAAATATCATGTGTACCAGA 2423
Query 1859 GTCTTCGTATGTTCCAGAAACTTTAATGGATGGTGAAGCTGAGCTGTCGCCAAGAGCGGT 1918
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2424 GTCTTCATATGTTCCAGAAACTTTAATGGATGGTGAAGCTGAGCTGTCGCCAAGAGCAGT 2483
Query 1919 ATCTTGCGGACATTTTGATGGAAGAGTAGAAGTGTCCATGAATGAGGACGTTGTACAGAC 1978
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 2484 ATCTTGCGGACATTTTGATGGAAGAGTAGAGGTTTCAATGAATGAGGACGTTGTACAGAC 2543
Query 1979 TCCCCCATCAAAAGAGATATACATAGACAGATTTCAGATATTTGATTGTTTAAAGAATAC 2038
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2544 TCCCCCATCAAAAGAGATATACATAGACAGATTCCAGATTTTTGATTGTTTAAAGAATAC 2603
Query 2039 ATGTGAGATCATTGCAGAATCTTCTGATGCGATGGTGATGGAAAACTGTTTCAAGGAATA 2098
| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2604 AAGTGAGATCATTGCAGAATCTTCTGATGCGACAGTGATGGAAGACTGTTTCAAGGAATA 2663
Query 2099 TGTAGGGACTGCCCAGAAGATGCAACCAGTTTCAGATGAATGCAGCCGTATAGATTTTGG 2158
||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 2664 TGTAGGGGCTGCCCAGAAGATGCAACAAGTTTCAGATGAATGTAGCCGTATGGATTTTGG 2723
Query 2159 TAAGACATTCAAGACGGCTCAGAAACCGAAGCTTGATACCTCTAAATCTGCTGTGCAAGA 2218
|||||||| |||||||||| ||||||| ||||| |||||||||| |||||| ||||||||
Sbjct 2724 TAAGACATACAAGACGGCTGAGAAACCAAAGCTAGATACCTCTAGATCTGCGGTGCAAGA 2783
Query 2219 ATCATGGGAAAAAATCTGTTCGAGTCATGCTGATTTCAAGCCATACTTGGATTCAGAACC 2278
||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 2784 ATCATGGGAAAAAATCTGTTCCAATCTTGCTGATTTCAAGCCATACTTGGATTCAGAACC 2843
Query 2279 TGTAGAAGCTCCACAAGTTCTTGATCTCACTCACCAGATAACCAATCTAATTTCAGAAGC 2338
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2844 TGTAGAAGCTCCACAAGTTCTTGATCTCACTCATCAGATAACCAATCTAATTTCAGAAGC 2903
Query 2339 TGACCTAACACATTTTAGATGCCTGAACCTTGGAGCTTTGGAGCCAATGATAAACGCTTC 2398
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2904 TGACCTAACACATTCCAGATGCCTGAACCTTGGAGCTTTGGAGCCAATGATGAACACTTC 2963
Query 2399 TGGAGAACTTGATACGTCTGGTTTATCTCAGATGCTTGAACAGATGACTTCCACTGTGGC 2458
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 2964 AGGAGATCTTGATACGTCTGGTTTATCTCAGATGCTTGAAGAGATGACTTCCACCGTGTC 3023
Query 2459 ACAGCAAGAATTTTGCTTTTTCACAAACCAAATTACTACAACAGGAACCGTTCCTACTTC 2518
||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||
Sbjct 3024 ACAGCAAGAATTTTGCTTTTTGACAAACCAAATTACGACAACGGGATCCGTTCCTACTTC 3083
Query 2519 ATCAGCCACCATGGTACCAGGAAGAGGATTGGCAGTAGACGAGGCAAGGCAGGATTGCAC 2578
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct 3084 ATCAGCCACCATGGTACCAGAAAGAGGATTAACAGTAGACGAGGCAAGGCAGGATTACAC 3143
Query 2579 ATCGAGCAATGGAAGCTGCTTGGATAT-AAACCCAGA----CTTG-----TTA--AAA-T 2625
||||||||||||||||||||||||||| ||||| ||| |||| ||| ||| |
Sbjct 3144 ATCGAGCAATGGAAGCTGCTTGGATATGAAACC-AGATATACTTGAAGACTTACTAAAAT 3202
Query 2626 GTAGGCGAATGGCACGGCTTTCCGGCATATTAGAGTCAGTAGTCCCTCTGCGATCATTGA 2685
||||||||||| ||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 3203 GTAGGCGAATGACACGGCTTTCCGGTGTCTTAGAGTCAGTAGTCCCTCTGAGATCATTGA 3262
Query 2686 AAGGAAAAGCTTTCCATGAATATGCTTCATTCATAGGGAAGATTTCAAGAGCAGATCCTT 2745
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 3263 AAGGAAGAGCTTTCCATGAATATGCTTCATTCATAGGGCAGATTTCAAGAGCAGATCCCT 3322
Query 2746 CCAACTTATCCGGAGCCATCGAGAAAGGCAGACGGCGAAGGTCAAGAGAAGCTCGACATT 2805
| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 3323 CTAACTTATCCGGAGCCTTGGAGAAAGGCAGACGGCGAAGGCCAAGAGAAGCTCGACATT 3382
Query 2806 ATCTGTCAATGGAACTATCCTCCGAAGATATTGCATTATTGGGCCAACACAGCACATACA 2865
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3383 ACCTGTCAATGGAACTATCCTCCGAAGATATTGCATTATTGGGCCAACACAGCACATACA 3442
Query 2866 GTAGAA-T-AATAA-A--GCA-TTTTCAGTTGTATAGAAGTTAGAACAGCTCCACACTTC 2919
||||| | ||||| | ||| ||||||||||||||||| | ||||| ||||||||||||
Sbjct 3443 ATAGAAATGAATAATAAAGCAGTTTTCAGTTGTATAGAAATCAGAACTGCTCCACACTTC 3502
Query 2920 AAGA 2923
||||
Sbjct 3503 AAGA 3506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145283466928
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5