BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951775

Length=1370
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54700.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   305    6e-82


> AT1G54700.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
mitochondrion; CONTAINS InterPro DOMAIN/s: Serine endopeptidase 
DegP2 (InterPro:IPR015724); BEST Arabidopsis thaliana protein 
match is: DegP protease 13 (TAIR:AT5G40560.1); Has 78 
Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr1:20415898-20417506 
FORWARD LENGTH=914
Length=914

 Score =  305 bits (165),  Expect = 6e-82
 Identities = 199/216 (92%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  672  GTCCATGGAGAATGCGATGATGCGAAAGTATTTTAAGATGAAGAAGATCATGACTGGTGT  731
            ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct  48   GTCGATGAAGAATGCGATGATGCGAAAGTATCTTAAGATGAAGAAGATCATGACCGGTGT  107

Query  732  TTTAGTGACTAAGACCAATCAGCATTCACAAGGTAACGAGTATGTGGAGAAGAACGACGT  791
            | |||||||| ||  |||||||||| |||  |||||| ||| |||| ||||||| |||||
Sbjct  108  TGTAGTGACTGAGGTCAATCAGCATGCACTTGGTAACCAGTTTGTGAAGAAGAATGACGT  167

Query  792  CATTCTCGAGATTGATGGTATGACCGTAGAAGATGATGGCAAAGTTTTTTATGAAAGCAG  851
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct  168  CATTCTCGAGATTGATGGTATGACCGTAGAAGATGATGGCAAAGTTTTCTATGAAAACAG  227

Query  852  GTTGTGGATGCACTTAAATGGTTTCATTGCTTTGAA  887
            ||||||||||||||||||||||||||||||||||||
Sbjct  228  GTTGTGGATGCACTTAAATGGTTTCATTGCTTTGAA  263



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67469532480


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5