BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951776
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 | c... 874 0.0
> AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 |
chr3:2194208-2196547 REVERSE LENGTH=1654
Length=1654
Score = 874 bits (473), Expect = 0.0
Identities = 534/562 (95%), Gaps = 9/562 (2%)
Strand=Plus/Plus
Query 788 GCTCTGTGATGACCGCAGCA-TTGGTGAAAATTCAATCAGATCAAAATTTGAGAATGATT 846
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 948 GCTCTGTGATGACCGCAGCATTTGGTGAAAATTCAATCAGATCAAAATTTGAAAATGATT 1007
Query 847 CTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCATCTGTAAATTCCGGATTCATGGCTG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CTGAGGGTGTTGGAGGGTTCTCTCTTCATTTTCCATCTGTAAATTCCGGATTCATGGCTG 1067
Query 907 ATACCTTAGGACTGGCATCACTCACAGCTCAATATAGAAACTTCCAGAAGCTCTTCTTTG 966
|| ||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1068 ATGCCTTAGGGCGGGCATCACTCACAGCTCAATATGGAAACTTCCAGAAATTCTTCTTTG 1127
Query 967 ATCTCACCCGCTTCCATGCTAGATTAGACTTTCCGTATGGTTTGAGGTTTCTTACCGGTG 1026
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1128 ATCTCACCCGTTTCCATGCTAGATTAGACTTTCCGCATGGTTTGAGGTTTCTTACCGGTG 1187
Query 1027 CCACTAGCGTCTCACAAGATCTTTTAAATTCTCGGCAGCCTAGTTTAGAAGCATTTCAGA 1086
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CCACTAGCGTCGCACAAGATCTTTTAAATTCTCGGCAGCCTAGTTTAGAAGCATTTCAGA 1247
Query 1087 AAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAACAGATTGTTGGACCGTCTAGTTTCA 1146
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1248 AAATCTGCCCTGAAGTATTAGTTTCTCTACAGCAACAGATTGTTGGACCGTTTAGTTTCA 1307
Query 1147 AAGTGGAGTCTGGAATTCAGATTGATCTGAAGAACGGGGTTGGAGCTAACCCCGTGACTG 1206
||||||||||||||||| |||| ||||||| |||||| ||||||||| |||||||
Sbjct 1308 AAGTGGAGTCTGGAATTGAGATCGATCTGAGGAACGG------AGCTAACCCTGTGACTG 1361
Query 1207 TAGATAAGACAGTATTTGCTATTGAATATGCTCTTCAAGTGCTTCTTTCTGCCAAGGCTG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TAGATAAGACAGTATTTGCTATTGAATATGCTCTTCAAGTGCTTCTTTCTGCCAAGGCTG 1421
Query 1267 TTGCTTGGTACTCCCCAAAACAGAAAGAATTCATGGTTGAGCTTCGTTTCTTTGAGACAT 1326
||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1422 TTGTTTCGTACTCCCCAAAACAGAATGAGTTCATGGTTGAGCTTCGTTTCTTTGAGACAT 1481
Query 1327 AGTATCAGGATTTTTTCCACTC 1348
|||||||||||||| ||||||
Sbjct 1482 AGTATCAGGATTTT--CCACTC 1501
Score = 595 bits (322), Expect = 3e-169
Identities = 346/358 (97%), Gaps = 0/358 (0%)
Strand=Plus/Plus
Query 400 AGTTTCCGCTTCACAATCTGACAGCAGAAGCGGTTTGGCTTGGACTTTTTGTGGATAATC 459
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 591 AGTTTCCGCTTCACAATCTGACAGCAGAAGCGGTTTGGCCTGGACTTTTTGTGGATAAAC 650
Query 460 ATGGTGAATATTGGGATGTGCCACTCTCAATGGCTATTGATCTAGCATCTCTTCCTGCTG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ATGGTGAATATTGGGATGTGCCACTCTCAATGGCTATTGATCTAGCATCTCTTCCTGCTG 710
Query 520 AGTCTGGTCCAAGTTACCATTTATGTTTACACCATAACAGCGGATCACCCAAGAAGTTAA 579
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AATCTGGTCCAAGTTACCATTTATGTTTACACCATAACAGCGGATCACCCAAGAAGTTAC 770
Query 580 ATTCTGATACTATGGAAGTGCCTCCACCGTCACTGCTTCCTTGTTTGTCTCTGACATCCG 639
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 771 ATTCTGATACTATGGAAGTGCCTCCACCGTCACTGCTTCCTGGTTTGTCTCTGAAATCTG 830
Query 640 CAATCTCTTATTGGACAAACATGGATCTCTGGAGGGGTACCACTCCGAAGCTCGAAACTT 699
|| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 831 CAGTCTCTTATAGGACAAACATGGATCTCTGGAGGGGTACCACTCCAAAGCTCGAAACTT 890
Query 700 ACAAGCCCTATGACGTCTTCCTCAGTAGTCCTCATGTCGCAGTATCTGGGATTATCGG 757
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GCAAGCCCTATGATGTCTTCCTCAGTAGTCCTCATGTCGCAGTATCTGGGATTATCGG 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5