BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951777
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06950.1 | Symbols: | Pseudouridine synthase family protein... 1014 0.0
AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 | c... 111 8e-24
> AT3G06950.1 | Symbols: | Pseudouridine synthase family protein
| chr3:2192685-2194321 FORWARD LENGTH=1223
Length=1223
Score = 1014 bits (549), Expect = 0.0
Identities = 618/652 (95%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 125 TTTGGATAGCTTTCACGCTGCTTTAAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGA 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 526 TTTGGATAGCTTTCACGCTGCTTTGAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGA 585
Query 185 GCTGAGTGCAGCGGTTCCTGAGTTCCATGCTCGGTTCTCTGCC-CAGAGCAAGGTTTACC 243
|||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||| |
Sbjct 586 GCTGAGTGCAGCGGTTCCTGAGTTTCATGCTCGGTTTTCTGCCTCT-AGCAAGGTTTATC 644
Query 244 GCTACCAGATATACAATGACACTTTCATGGACCCGTTCCAGCGTTATTGGGCATACCACT 303
|||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 645 GCTACCAGATATACAACGACACTTTCATGGACCCGTTCCAGCGTCATTGGGCTTACCACT 704
Query 304 GTGCTTATAAACTGAATGCTTCTAAAATGCGGGAAACTGCAGATCTTTTTGTTGGAATGC 363
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 705 GTGCTTATAAACTGAATGCTTCTAAAATGCGGGAAGCTGCAAATCTTTTTGTTGGAAAGC 764
Query 364 ATGATGTCTCTGCATTTGCTAACGCTACACGGGAAGATGGAGTACCTGATCCTTTGAAAA 423
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 765 ATGATTTCTCTGCATTTGCTAACGCTACTCGGGAAGATGGAGTACCTGATCCTTTGAAAA 824
Query 424 GTATATCTCGCTTCTATGTCATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTT 483
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CTATATCTCGCTTCGATGTCATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTT 884
Query 484 CAGGCTTTTTGTACAGACAAGTCAGAAACATGGTAGCTTTGTTGATTCATATTGGAAAAG 543
| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 885 CTGGCTTTTTGTACAGACAAGTCAGAAACATGGTAGCTTTGCTGATTCAGATTGGAAAAG 944
Query 544 AATCTCTGGATTCTGACATCGTCCCAATGATTCTGGAAACAAAAGACAGGAGGGTGCTTG 603
|| | |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 945 AAGCACTGGATTCAGACATTGTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTG 1004
Query 604 CAAAGTATACTACTTTGCCTGTGCCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATA 663
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1005 CAAAGTATACTAGTTTGCCTGCGTCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATA 1064
Query 664 AGGAAGATCATTTAAAGCTTCCATTGGATTGTCCTGTAACTAGTTTTGGTAGACATCACA 723
||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1065 AGGAAGATCATCTAAAGCTTCCATTGGATTGTCCTGTTACTAGTTCTGGTAGACATCACA 1124
Query 724 CTATAACAAAATGTAAACTTCCCTTCTATTGAATCATTCTTCTGTTTAACAT 775
||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1125 CTATAACAAAATGTAAACTTCCCTTCTATTGAAACATTCTTCTGTTTGACAT 1176
> AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 |
chr3:2194208-2196547 REVERSE LENGTH=1654
Length=1654
Score = 111 bits (60), Expect = 8e-24
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 710 TGGTAGACATCACACTATAACAAAATGTAAACTTCCCTTCTATTGAATCATTCTTCTGTT 769
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1653 TGGTAGACATCACACTATAACAAAATGTAAACTTCCCTTCTATTGAAACATTCTTCTGTT 1594
Query 770 TAACAT 775
| ||||
Sbjct 1593 TGACAT 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5