BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951784
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31150.1 | Symbols: | ATP binding;ATPases, coupled to trans... 1061 0.0
> AT2G31150.1 | Symbols: | ATP binding;ATPases, coupled to transmembrane
movement of ions, phosphorylative mechanism | chr2:13272375-13274578
FORWARD LENGTH=2049
Length=2049
Score = 1061 bits (574), Expect = 0.0
Identities = 783/875 (89%), Gaps = 49/875 (6%)
Strand=Plus/Plus
Query 429 GAGAAAGAGATAGTGGAGCTTTTCAGGAAAGTCCAAGCTCAGCTCCGGGCTCGAGCTGCT 488
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1151 GAGAAAGAGATAGTGGAGCTTTTCAAGAAAGTCCAAGTTCAGCTCCGGGCTCGAGCTGCT 1210
Query 489 GCTaagaaagaagaaaagaagactgaagaagcttctaaaggacaaggg-ggaaaagaTAG 547
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 1211 GCTAAGAAAGAAGAAAAGAAGACTGAAGAAGCTTCTAAAGGAC-AGGGAGGAAAAGAGAG 1269
Query 548 CGAGACAGTGGACTCCCTTCTTAAGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAA 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TGAGACAGTGGACTCCCTTCTTAAGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAA 1329
Query 608 ACAAGTTAGCAATTTTAATTCTGAAAAGCAGCTACAAAGAGATGATGATGCTTCAGAAAG 667
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1330 ACAAGTTAGCAATTTCAATTCTGAGAAGCAGCTCCAAAGAGATGATGATGCTTCAGAAAG 1389
Query 668 ACAAGATCACAGTTCCAATCGTTTTGATTCGCAAAACAAAGATCATAATGCAACACCCTT 727
|||| |||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1390 ACAAAATCACAGTTCCAGTCGTTTCGATTCGCGAAACAAAGATCATAATGCAACACCCTT 1449
Query 728 TACCAGGCCAGCATCAAGCTTCAGACGCAATTCGCCTGTACCAAGACATAAATCCCAAGC 787
||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||| |||||
Sbjct 1450 TACCAGGCCAGCATCAAGCTTCAAACGTAATTCTCCTGTACCGAGACATAAATCTCAAGC 1509
Query 788 CAGTTATTCTAGTGAGGCCATTTTTGATCAAGCTTCAAGTTACAGTGTGACTTGGACCCA 847
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1510 CAGTTATTCTAGTGAGGCCATTTTTGATGAAGCTTCAAGTTACAGTGTGACTTGGACCCA 1569
Query 848 GAAAAAGGATCAAGTAGAGTCGCGTGATGAACCTGAATACGAGCCTGAGCCTGAGTCTGC 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 GAAAAAGGATCAAGTAGAGTCGCGTGATGAACCTGAATACGAGCCTGAGCCTGAGTCTGC 1629
Query 908 AGCTGAGTATGATGAACCTGAGCCTGAGTCTGCAGCTGAGTATGATGAACCTGAACCTGA 967
||||||||||||||||||||| |||||| || ||||||||| | |||||| ||||
Sbjct 1630 AGCTGAGTATGATGAACCTGAACCTGAG---GC---TGAGTATGA--A-CCTGAATCTGA 1680
Query 968 GGCTGAGTATGAATCTGAATCTGAACCAGGACTTGCTATTCTAGATTCAGTGTCAGAGCT 1027
| || | | | || || | || || | | || |||||||||||||
Sbjct 1681 ACC--AG-A--ACT-TG---CT-A--------TT-CT---CGA-AT-CAGTGTCAGAGCT 1716
Query 1028 AAAACCAGAATCGTTTTACCAAGAGGAGGATGAAGATGAAGAGGAGGATCATGACGCCGT 1087
|||| ||| ||||||||||||||||| ||||||||||| | | |||||||| || |||
Sbjct 1717 GAAACTAGAGTCGTTTTACCAAGAGGAAGATGAAGATGA-G-G-AGGATCATAACTTCGT 1773
Query 1088 TGTAGATGAGTTATCAGATGATGACGAGTCTCTCGATA-----T-C-GAGGAAGAAACTG 1140
| |||||||||||||||||||||||||||||||| ||| | | |||||||| ||||
Sbjct 1774 TATAGATGAGTTATCAGATGATGACGAGTCTCTCAATACCGACTACCGAGGAAGAGACTG 1833
Query 1141 CGAAAGACGAAGATTTGAGTGCACTGAAGTTTGTAGAACTTAGAGCCATAGCAAAAACAA 1200
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1834 CGAAAGACGAAGATTTGAGTGCACTGAAGTTGGTAGAACTTAGAGCCATAGCAAAATCAA 1893
Query 1201 GAGGACTTAAAGTGA-TTTCAAAGATAAAGAAAGCTGATCTACTGAATTTATTGGGTAGT 1259
||||||| |||| || |||||||||| ||||||| ||| ||| ||| |||||||||||||
Sbjct 1894 GAGGACTCAAAG-GAATTTCAAAGATGAAGAAAGTTGAGCTAGTGACTTTATTGGGTAGT 1952
Query 1260 AATAATAAATCATGATGATCAGATTT--AACATGA 1292
| ||||||| |||||||||||||||| |||||||
Sbjct 1953 AGTAATAAAGCATGATGATCAGATTTTTAACATGA 1987
Score = 228 bits (123), Expect = 1e-58
Identities = 129/132 (98%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 235 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 1079
Query 295 ACAGGCGAAACGAAGATAGGGATGGTTTAGTAGATGGTGGTCTCGAAGACGACATTTTGT 354
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1080 ACAGGCGAAACGAAGATAAGGATGGTTTAGTAGATGGTGGTCTTGAAGACGACATGTTGT 1139
Query 355 CTTCCAAAAACG 366
||||||||||||
Sbjct 1140 CTTCCAAAAACG 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63654291060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5