BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951789
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22800.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1659 0.0
> AT3G22800.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:8062888-8064556 REVERSE LENGTH=1669
Length=1669
Score = 1659 bits (898), Expect = 0.0
Identities = 1048/1119 (94%), Gaps = 15/1119 (1%)
Strand=Plus/Plus
Query 13 TCATCACTCATGAGAGAAGAAACCTTATAT-TTCCAATGGCGGTTCATGGCCTTTGGTCT 71
|||| | ||||||||||||| ||||| | | ||||| ||| ||||| ||| || ||||||
Sbjct 73 TCATTAGTCATGAGAGAAGACACCTTCT-TCTTCCAGTGGTGGTTCTTGGTCTCTGGTCT 131
Query 72 CATCTTCCTCTTCCTTCTTCCTCAAGCTTTCACCTATGATACTCCTCCCATAAACCCGTG 131
|| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 132 CAGCTTCATCTTCCTTCTTCCTCAAGCTTTCACCTACCATACTCCTCCAATAAACCCGTG 191
Query 132 CTATGCACATGC-TCCTTTTCTTCCTCCTATCGCAAACCCTAGGCTCTTAAAAGCTTAT- 189
|| | | | | | ||||||||||||||||||| ||||||| |||||||||||||||| |
Sbjct 192 CT-T-CGC-T-CATCCTTTTCTTCCTCCTATCACAAACCCGAGGCTCTTAAAAGCTT-TC 246
Query 190 GCAGCTCTTCAAGCTTGGAAGTTCACCATAACTTCTGACCCAAACGGCTTCACTTCTAAC 249
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 247 ACAGCTCTTCAAGCTTGGAAGTTCACCATAACCTCTGACCCAAACGGCTTCACTTCTAAC 306
Query 250 TGGTGTGGTCCTCATGTTTGTAACTACACAGGCGTGTATTGTGCACCGGCTTTAGATAAC 309
||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 307 TGGTGCGGTCCTAATGTTTGTAACTACACAGGCGTGTTTTGTGCACCGGCTCTAGATAAC 366
Query 310 CCTTATGTCTTAACCGTCGCTGGTATAGACTTAAACCATGCCAATATCGCCGGGTATCTC 369
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 367 CCTTATGTCTTAACCGTCGCTGGTATAGACTTGAACCATGCTAATATCGCCGGTTATCTC 426
Query 370 CCTATAGAGCTCGGTCTCTTAACCGATCTTGCCTTGTTCCATATCAACTCCAACCGTTTT 429
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 427 CCTTTAGAGCTTGGTCTCTTAACCGATCTTGCCTTGTTCCATATCAATTCCAACCGTTTT 486
Query 430 CAAGGTCAACTTCCCAAAACTCTAAAATGTCTCGAGCTTCTCCATGAGCTTGACGTCAGC 489
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 487 CAAGGTCAACTTCCCAAAACTCTAAAATGTCTCCATCTTCTCCATGAGCTTGACGTCAGC 546
Query 490 AACAATAAACTCTCCGGCGAGTTTCCTTCAGTAATCTTCTCTTTGCCTTCCTTGAAGTTT 549
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 547 AACAATAAACTCTCCGGCGAGTTTCCTTCCGTAATCTTCTCTTTGCCTTCCTTGAAGTTT 606
Query 550 CTCGACATTAGGTTCAATGAGTTCCAAGGAGATGTTCCTGA-CCAACTCTTTGACCTAAA 608
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 607 CTCGACATTAGGTTCAATGAGTTCCAAGGTGATGTTCCT-AGCCAACTCTTTGACCTAAA 665
Query 609 CCTTGACGCTCTCTTCATTAACGACAACAAGTTCCAGTTTAGGTTACCGAAAAACATTGG 668
||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 666 CCTCGACGCTCTCTTCATTAACGACAACAAATTCCAGTTTAGGTTACCGAGAAACATCGG 725
Query 669 AAACTCTCCGGTTTCGGTTCTTGTCTTGGCCAACATCGATCTCCAAGGATCTTGTGTACC 728
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 726 AAACTCTCCGGTTTCTGTTCTTGTCTTGGCCAACAACGATCTCCAAGGATCTTGTGTACC 785
Query 729 TCCGAGTTTCTACAAAATGGGGAAAACATTGCACGAACTCATTATCTCCAACTCACAGA- 787
||| |||||||||||||||||||||||||| |||||| |||||||| | |||||||| |
Sbjct 786 TCCAAGTTTCTACAAAATGGGGAAAACATTACACGAAATCATTATCACGAACTCACA-AC 844
Query 788 TAACCGGTTGTTTAAACCGGGAAATCGGTAT-ATTAAACCAGTTGACGGTTTTTGACGTG 846
||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||||
Sbjct 845 TAACCGGTTGTTTAAACCGGGAAATCGGTTTGCTT-AACCAGTTGACGGTTTTCGACGTG 903
Query 847 AGTTACAACAACTTGGTGGGTTCGTTACCGGAGACTATAGGTGATATGAAGAGTTTGGAG 906
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 904 AGTTACAACAACTTGGTGGGTTCGTTGCCGGAGACTATAGGTGATATGAAGAGTTTAGAG 963
Query 907 CAGTTAAACATCGCGCATAACAAATTTTCCGGCTACATTCCGGAGAGTATCTGCCGATTA 966
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 964 CAGTTAAACATTGCGCATAACAAATTCTCCGGCTACATTCCGGAGAGTATCTGCCGATTA 1023
Query 967 CCAAGCCTCGAGAACTTCACTTACTCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGT 1026
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CCAAGGCTCGAGAACTTCACTTACTCGTATAACTTCTTCTCCGGTGAGCCACCGGCTTGT 1083
Query 1027 CTGAGGCTTCAAGAGTTTGATGATCGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGG 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TTGAGGCTTCAAGAGTTTGATGATCGTAGAAATTGTTTACCTTCAAGGCCAATGCAACGG 1143
Query 1087 TCTCCCGCTGAATGTTAATCCTTTTCTTCTTATCCTATT 1125
|||| ||||||||| |||||||||||||||||||||||
Sbjct 1144 TCTCTCGCTGAATGCAAATCCTTTTCTTCTTATCCTATT 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5