BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951802

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:117873...   130    1e-29
  AT2G48060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   122    2e-27


> AT4G22300.1 | Symbols: SOBER1 | carboxylesterases | chr4:11787313-11789280 
REVERSE LENGTH=1064
Length=1064

 Score =  130 bits (70),  Expect = 1e-29
 Identities = 80/85 (94%), Gaps = 0/85 (0%)
 Strand=Plus/Plus

Query  108  AGGTGCATTAACCCTGGCTAGTGTTCTTCTTTACCCTAAAGCTCTTGGAGGAGGTTCAGT  167
            ||||||||||||| |||| ||||||||||||||||||||| || ||||||||||| ||||
Sbjct  487  AGGTGCATTAACCTTGGCGAGTGTTCTTCTTTACCCTAAAACTATTGGAGGAGGTGCAGT  546

Query  168  CTTTAGCGGATGGATTCCATTCAAT  192
            |||||||||||||||||||||||||
Sbjct  547  CTTTAGCGGATGGATTCCATTCAAT  571


> AT2G48060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm 
cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function 
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa 
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes 
- 105 (source: NCBI BLink). | chr2:19651196-19662617 REVERSE 
LENGTH=7984
Length=7984

 Score =  122 bits (66),  Expect = 2e-27
 Identities = 89/99 (90%), Gaps = 5/99 (5%)
 Strand=Plus/Plus

Query  1    TTCGATGAGAATTGGTGGGATATGGTGATCGTTAAGACAAAAGGTTCCCATGGA-ATTTT  59
            ||||||||||| |  |||||||||||||||||||||||||||| |||| ||||  | |||
Sbjct  186  TTCGATGAGAA-T--TGGGATATGGTGATCGTTAAGACAAAAGTTTCCAATGGCGAGTTT  242

Query  60   TTATGGTGGGCTTCTTGTTGCCTTCGCTACTTCTGGCAG  98
            || ||||||||||||||||||||||||| ||||||||||
Sbjct  243  TT-TGGTGGGCTTCTTGTTGCCTTCGCTTCTTCTGGCAG  280



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17442908903


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5