BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951803

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   233    8e-61


> AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=2799
Length=2799

 Score =  233 bits (126),  Expect = 8e-61
 Identities = 164/183 (90%), Gaps = 0/183 (0%)
 Strand=Plus/Plus

Query  24   GAGAAAACATGAGCGACACTTCACGTCCTCTGTCTTGTCTCCGGCTACTCCTATTGTCCA  83
            |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct  147  GAGAAAACATAAGCGACACTTCACGTCCTCTGTTTTGTCTCCGGTTACTCCTATTGTCCA  206

Query  84   TAAAGTGTTCGACGAAAAGCCCAAGATAGAGGATAGGACTGTGGAGTCGAtttttttGTT  143
            |||  |||||||||||  |||  ||| |||| |||||||| |||||||||  ||| ||||
Sbjct  207  TAACCTGTTCGACGAATTGCCTGAGAGAGAGAATAGGACTATGGAGTCGAGCTTTATGTT  266

Query  144  CTTACGAGATGTTCTTAGATCCTCCATGATGATAACAGAGACAGAGACTCCGAGGAGTGT  203
            |||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||||||
Sbjct  267  CTTACGAGATGTACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTGT  326

Query  204  CCA  206
            |||
Sbjct  327  CCA  329


 Score =  209 bits (113),  Expect = 1e-53
 Identities = 179/209 (86%), Gaps = 11/209 (5%)
 Strand=Plus/Plus

Query  203  TCCAAGATTTAACTACATCTTCGAAGCTTCTGACGCTTTAC----G--CGGGGGACTTAG  256
            ||||||||||| ||||||||||||||||||||||| |||||    |  | ||||| ||||
Sbjct  356  TCCAAGATTTAGCTACATCTTCGAAGCTTCTGACGTTTTACGGTAGAACCGGGGAGTTAG  415

Query  257  TGTCTTCTTTGGGCCTATTTGGTGAATTGAAAGATAAAGATGTGATTGTTTGGAACAGTA  316
            | ||||||| | | || |||| |||||||||||| |||||||||||||||||||||||||
Sbjct  416  TATCTTCTTCGTGTCTGTTTGATGAATTGAAAGAGAAAGATGTGATTGTTTGGAACAGTA  475

Query  317  TGATCACTGGTTCGAATCAAAATGGTCATTACATTACATGGCAGCTGTTGGATTGTTCGT  376
            ||||||||| || |||||||||||||| |||||||    | ||||||||||||||||  |
Sbjct  476  TGATCACTGCTTTGAATCAAAATGGTCGTTACATT----G-CAGCTGTTGGATTGTTTAT  530

Query  377  TGAGATGATTCAGAAGGGATATGAGTTTG  405
            |||||||||||| || ||| |||||||||
Sbjct  531  TGAGATGATTCATAAAGGAAATGAGTTTG  559



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5