BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951804 Length=480 Score E Sequences producing significant alignments: (Bits) Value AT4G19220.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 396 1e-109 > AT4G19220.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=2799 Length=2799 Score = 396 bits (214), Expect = 1e-109 Identities = 254/273 (93%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 208 GATGTTATTTCTTGGAATGCAATCCTTAATGGGTTTGCTGCAAATGGAATGTTCGAGGAA 267 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 1066 GATGTTATTTCTTCGAACGCAATCCTTAATGGGTTTGCTGCAAATGGAATGTTTGAAGAA 1125 Query 268 GCATTTGGTGTTTTGAAGGAAATGCAATCGGTGGATAAGATCCAGCCTGATATCGCCACC 327 ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 1126 GCATTTGGTATTTTGAACCAAATGCAATCGGTGGATAAGATTCAGCCTGATATCGCCACT 1185 Query 328 GTGGTTTCAATAACTTCCATATGTGGTGATTTCTGTTTGTCACGAGAGGGAAGAGCAGTT 387 |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 1186 GTGGTTTCAATAACTTCCATATGTGGTGATTTAAGTTTTTCACGAGAGGGAAGAGCAGTT 1245 Query 388 CATGGTTATACGGTTCGC-TGGGAGATGCAATCCAGAGCTTTAGAGGTAATAAACAGTGT 446 |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| || Sbjct 1246 CATGGTTATACGGTTCGCATGG-AGATGCAATCCAGAGCATTAGAGGTAATAAACAGCGT 1304 Query 447 TATTGATATGTAACGTAAATGTGGCTTAA-AAC 478 |||||||||||| ||||||||||||||| ||| Sbjct 1305 TATTGATATGTATGGTAAATGTGGCTTAACAAC 1337 Score = 305 bits (165), Expect = 2e-82 Identities = 193/207 (93%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 1 TCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCTGATAGTGTGACTTTT 60 |||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 817 TCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCTGATACTGTGACTTTT 876 Query 61 TCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTGGGTGAACCCCTCCAC 120 ||||||||||||||||||||||||||| ||||| ||||| ||||||||||| | |||||| Sbjct 877 TCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTGGGTGAATCACTCCAC 936 Query 121 GGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTGAGGTCTCTGTGGCCAACTCCATC 180 |||||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||| Sbjct 937 GGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGGCAACTCGATC 996 Query 181 ATTTCGATGTACTCAAAATGTGAGGAC 207 |||||||||||||||||||| | |||| Sbjct 997 ATTTCGATGTACTCAAAATGCGGGGAC 1023 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22856536885 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5