BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951804

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   396    1e-109


> AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=2799
Length=2799

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 254/273 (93%), Gaps = 3/273 (1%)
 Strand=Plus/Plus

Query  208   GATGTTATTTCTTGGAATGCAATCCTTAATGGGTTTGCTGCAAATGGAATGTTCGAGGAA  267
             ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct  1066  GATGTTATTTCTTCGAACGCAATCCTTAATGGGTTTGCTGCAAATGGAATGTTTGAAGAA  1125

Query  268   GCATTTGGTGTTTTGAAGGAAATGCAATCGGTGGATAAGATCCAGCCTGATATCGCCACC  327
             ||||||||| |||||||  |||||||||||||||||||||| ||||||||||||||||| 
Sbjct  1126  GCATTTGGTATTTTGAACCAAATGCAATCGGTGGATAAGATTCAGCCTGATATCGCCACT  1185

Query  328   GTGGTTTCAATAACTTCCATATGTGGTGATTTCTGTTTGTCACGAGAGGGAAGAGCAGTT  387
             ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||
Sbjct  1186  GTGGTTTCAATAACTTCCATATGTGGTGATTTAAGTTTTTCACGAGAGGGAAGAGCAGTT  1245

Query  388   CATGGTTATACGGTTCGC-TGGGAGATGCAATCCAGAGCTTTAGAGGTAATAAACAGTGT  446
             |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||
Sbjct  1246  CATGGTTATACGGTTCGCATGG-AGATGCAATCCAGAGCATTAGAGGTAATAAACAGCGT  1304

Query  447   TATTGATATGTAACGTAAATGTGGCTTAA-AAC  478
             ||||||||||||  ||||||||||||||| |||
Sbjct  1305  TATTGATATGTATGGTAAATGTGGCTTAACAAC  1337


 Score =  305 bits (165),  Expect = 2e-82
 Identities = 193/207 (93%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  1     TCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCTGATAGTGTGACTTTT  60
             |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct  817   TCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCTGATACTGTGACTTTT  876

Query  61    TCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTGGGTGAACCCCTCCAC  120
             ||||||||||||||||||||||||||| ||||| ||||| ||||||||||| | ||||||
Sbjct  877   TCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTGGGTGAATCACTCCAC  936

Query  121   GGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTGAGGTCTCTGTGGCCAACTCCATC  180
             |||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |||
Sbjct  937   GGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGGCAACTCGATC  996

Query  181   ATTTCGATGTACTCAAAATGTGAGGAC  207
             |||||||||||||||||||| | ||||
Sbjct  997   ATTTCGATGTACTCAAAATGCGGGGAC  1023



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5