BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951805

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   111    4e-24


> AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=2799
Length=2799

 Score =  111 bits (60),  Expect = 4e-24
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  96    TCTTGTGATTCGTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAATG  155
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1516  TCTTGTGATTCCTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAG  1575

Query  156   CTAGGG  161
             ||||||
Sbjct  1576  CTAGGG  1581



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18749870377


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5