BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951812
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46880.1 | Symbols: ATPAP14, PAP14 | purple acid phosphatase... 1999 0.0
> AT2G46880.1 | Symbols: ATPAP14, PAP14 | purple acid phosphatase
14 | chr2:19264573-19266446 REVERSE LENGTH=1577
Length=1577
Score = 1999 bits (1082), Expect = 0.0
Identities = 1192/1246 (96%), Gaps = 4/1246 (0%)
Strand=Plus/Plus
Query 1 TCATAGTCACTAACCTAAAAG----AATGGAGGAAGCTTGGAGGAGATTTGTTTTATTCT 56
||||||||||||||||||||| |||||||||| || ||||||| ||||| ||| ||
Sbjct 9 TCATAGTCACTAACCTAAAAGAATTAATGGAGGAAACTCGGAGGAGGTTTGTCATATCCT 68
Query 57 CTGTTCTAAGTGTTTCTTTGATCTACTTATGTCTTTCAACATGTCACGTTTCCGCCTACG 116
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 69 CTGTTCTAAGTGTTTCTTTGATCTACTTATGTCTTTCGACATGTCACGTTTCCGCCTTCG 128
Query 117 GCTTCGGTAGAAGGCAGCTCCGGTTTAATACAGATGGTCGGTTCAAGATACTGCAAGTGT 176
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 129 ACTTCGGTAGAAGGCAGCTCCGGTTTAATACTGATGGTCGGTTCAAGATACTGCAAGTGT 188
Query 177 CAGATATGCACTACGGTTTCGGCAAAGAGACACAATGCTCAGACGTCTCACCAGCAGAAT 236
||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct 189 CAGATATGCACTACGGTTTTGGCAAAGAGACGCAATGCTCAGACGTTTCACCTGCAGAAT 248
Query 237 TTCCTTACTGCTCTGATCTCAACACCACCTCCTTTTTACAGCGAACTATCGCTTCCGAGA 296
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 249 TTCCTTACTGCTCCGATCTCAATACTACCTCCTTTTTACAGCGAACTATCGCTTCCGAGA 308
Query 297 AGCCCGATCTCATCGTCTTCTCTGGAGACAATGTATATGGATTGTGCGAGACAAGAGACG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 309 AGCCCGATCTCATCGTCTTCTCTGGAGACAATGTATATGGATTGTGCGAGACAAGTGACG 368
Query 357 TGGCAAAATCGATGGACATGGCATTTGCTCCAGCCATCGAATCGGGGATTCCATGGGTGG 416
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 369 TGGCAAAATCGATGGACATGGCATTTGCTCCTGCGATCGAATCGGGGATTCCATGGGTGG 428
Query 417 CCATTTTGGGGAATCACGACCAAGAATCCGACATGACTAGAGAAACAATGATGAAATACA 476
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CTATTTTGGGGAATCACGACCAAGAATCCGACATGACTAGAGAAACAATGATGAAATACA 488
Query 477 TCATGAAACTCCCAAACTCGTTGTCTCAAGTAAACCCTCCCGATGCTTGGCTATACCAAA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TCATGAAACTCCCAAACTCGTTGTCTCAAGTAAACCCTCCCGATGCTTGGCTATACCAAA 548
Query 537 TCGACGGTTTTGGTAATTACAATCTACAAATCGAGGGTCCTTTTGGCTCGCCTCTCTTCT 596
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 549 TCGACGGTTTTGGTAATTACAATCTACAAATCGAGGGTCCTTTTGGCTCCCCTCTCTTCT 608
Query 597 TCAAATCCATTCTCAATCTCTATCTACTCGACGGTGGAGCTTACACGAAGCTCGATGGCT 656
|||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |
Sbjct 609 TCAAATCCATTCTCAATCTCTATCTACTAGACGGTGGATCTTACACGAAGCTTGATGGTT 668
Query 657 TTGGTTACAAATATGATTGGGTCAGAACCTCTCAACAGAATTGGTATGAACACACTTCTA 716
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 669 TTGGTTACAAATATGATTGGGTCAAAACCTCTCAACAGAATTGGTATGAACACACTTCTA 728
Query 717 AATGGCTTGAGATGGAACACAAGAGGTGGCCATTTCCACAGAATAGTACGGCACCGGGAT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 729 AATGGCTTGAGATGGAACACAAGAGGTGGCCATTTCCACAGAATAGTACGGCACCAGGAT 788
Query 777 TGGTTTACCTCCACATTCCAATGCCGGAATTTGCATTGTTCAACAAATCGACGGAGATGA 836
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TGGTTTACCTCCACATTCCGATGCCGGAATTTGCATTGTTCAACAAATCGACGGAGATGA 848
Query 837 CTGGAGTGAGACAAGAATCTACATGTTCTCCACCTATCAACTCTGGTTTCTTCACCAAAC 896
||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 849 CTGGAGTAAGACAAGAATCTACTTGTTCTCCACCTATCAACTCTGGTTTCTTTACCAAAC 908
Query 897 TTGTCGAAAGAGGTGAAGTCAAAGGTGTTTTCAGCGGTCACGACCACGTCAACGACTTCT 956
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 909 TTGTCGAAAGAGGTGAAGTCAAAGGTGTTTTCAGTGGTCACGACCACGTCAACGACTTCT 968
Query 957 GTGCCGAACTCCATGGGGTCAACCTTTGTTACGCAGGCGGTGCCGGGTATCATGGATATG 1016
||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |
Sbjct 969 GTGCCGAACTCCATGGGATCAACCTTTGTTACGCAGGCGGAGCCGGGTATCATGGGTACG 1028
Query 1017 GAAAGGTTGGTTGGGCGAGGAGAGCAAGACTAGTTGAAGCTCAGCTTGAGAAGACTAAGT 1076
|| ||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||| ||
Sbjct 1029 GACAGGTTGGTTGGGCAAGGAGAGTAAGAGTAGTTGAGGCTCAGCTTGAGAAGACTATGT 1088
Query 1077 ATGGACGTTGGGGAGCTGTTGATACAATCAAAACTTGGAAACGGCTCGATGATAAGAATC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 ATGGACGTTGGGGAGCTGTTGATACAATCAAAACTTGGAAACGGCTCGATGATAAGAATC 1148
Query 1137 ATTCTTTAATTGATACTCAACTTCTTTGGTCCAAGAACACAATTCTTGAGCCAAATTTTG 1196
||||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||||
Sbjct 1149 ATTCTTTGATTGATACTCAACTTCTCTGGACCAAGAACACAACTCTTGAGCCAAATTTTG 1208
Query 1197 GGTTTACTTGCTCTACTATACCACAACACTGATCATGAAGCTGAGT 1242
|||||| ||||||||||||||||||||||||||||| |||| ||||
Sbjct 1209 GGTTTAGTTGCTCTACTATACCACAACACTGATCATTAAGCAGAGT 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5